Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03056 ATGACGTCATTTTTTTCTTCCTCATCGGAGAACAACCTCTCAACCGCAAGAACCATCATCTCAACTGCCGCCACCTTTGCGGCCGCCGCAGCCGCCTCCGCAATGATACTCCGTTCAGTCACCGACGAGTTTTTACCAATGGACCTCCGTCACTACTTATACACAAAGATTAAAAACGCTTACTATCGTCTCTCCCCCGATCTCACAATGGTAATCGAAGAATTCGAAGGCCTCGACAACAACCAAATCTACTCCGCCGCCGAAATCTATCTCGGCACCATCGCTTCACCGTCAACAAGAAAGCTCCGCGTAAGCAAATTCGATCACCAACAAACCTACAGTCTCACAATGGAACGCGATCAATCGGTAACCGATTACTTCAAAGGCGTTAAACTTAACTGGACTCTTTTCTTCCGCCACGTCGAGAATCTTCACCGCAACCGCGATATATCCGCCGCTTCGAAATCGGAAATCCGTTCGCTGGAATTAACATTCCACAGAAAGCACCAAAACCTGGTTCTTGATCAATACATTCCGTTCATTCTTGAAGAAGCAAGATCAAAGAAACAAGAACTGAAAGCGCTGAGAATCTTCACCGTTGATCACCAGAATCTGTACGGGAATTTGAACGACGCTTGGGTGGGGACCACGTTAGATCATCCGTCGACTTTTGACACGCTGGCACTTGACCGTGATTTGCGGGAGTTTGTTACGGGGGATTTGGAAAAGTTTGTTAGGAGAAAGGAATACTATAAGAAAGTTGGAAAAGCTTGGAAGAGAGGCTATTTGTTGTACGGTCCCCCTGGAACTGGGAAGAGTAGTTTGATTGCTGCTATGGCGAATTACTTGCATTTCGATATTTACGATTTGGAACTTGCTGAATTGAATAGTAATGATGAGCTTAGGAGGTTGTTGATCGCCATGCCGAATAGGTCTATCCTTGTTATCGAAGATATTGATTGTACAGTCGAGTTTCAGGAGCGTAATTCGCAATCTTTAACTGGCTCTGGAAGAAGTAGGGATCGACAGGTTACACTATCAGGGCTGCTGAATTTTATTGATGGGTTATGGTCAAGCTGTGGAGATGAGAGGATTATAGTGTTCACAACAAACCATAAGGAAAAGCTTGATTCGGCATTGTTGCGGCCGGGTCGAATGGATGTTCATATACACATGTCCTATTGTACTCCTTATGGTTTTAGACAGTTGGCTTTCAATTACCTTGGTATTAAAGAAAATCCTCGGTTCCGTGAGATTGAAGCGAAAATTGAGAAAACGCTTGTGACTCCAGCTGAAATAGCAGAGCAGCTTCTTAAGGGCGCTGAAGTTGGAACTGTTCTTGAAGATCTGTTGGGTTTTCTTACAAAGAAGAAAGAAAGTCAGGAAGTTGAGGCTAAAAAGAGAGAACAAGAGGAGCTGAAAGATGACAGTGATGGTAGTAAAGGAAATGGTGTCATTGGTACCGCATTGAAATTGTAA 1479 0.4429 MTSFFSSSSENNLSTARTIISTAATFAAAAAASAMILRSVTDEFLPMDLRHYLYTKIKNAYYRLSPDLTMVIEEFEGLDNNQIYSAAEIYLGTIASPSTRKLRVSKFDHQQTYSLTMERDQSVTDYFKGVKLNWTLFFRHVENLHRNRDISAASKSEIRSLELTFHRKHQNLVLDQYIPFILEEARSKKQELKALRIFTVDHQNLYGNLNDAWVGTTLDHPSTFDTLALDRDLREFVTGDLEKFVRRKEYYKKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLHFDIYDLELAELNSNDELRRLLIAMPNRSILVIEDIDCTVEFQERNSQSLTGSGRSRDRQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDSALLRPGRMDVHIHMSYCTPYGFRQLAFNYLGIKENPRFREIEAKIEKTLVTPAEIAEQLLKGAEVGTVLEDLLGFLTKKKESQEVEAKKREQEELKDDSDGSKGNGVIGTALKL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03056 492 Pfam Domain associated at C-terminal with AAA 45 136 IPR025753 -
Vivi1g03056 492 PANTHER BCS1 AAA-TYPE ATPASE 28 462 - -
Vivi1g03056 492 MobiDBLite consensus disorder prediction 461 492 - -
Vivi1g03056 492 Pfam ATPase family associated with various cellular activities (AAA) 263 393 IPR003959 GO:0005524|GO:0016887
Vivi1g03056 492 Gene3D - 391 457 - -
Vivi1g03056 492 Gene3D - 213 390 IPR027417 -
Vivi1g03056 492 Coils Coil 456 476 - -
Vivi1g03056 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 437 IPR027417 -
Vivi1g03056 492 MobiDBLite consensus disorder prediction 461 479 - -
Vivi1g03056 492 CDD RecA-like_BCS1 240 392 - -
Vivi1g03056 492 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Vivi1g03056 492 SMART AAA_5 258 396 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03056 Vivi-Chr1 67535369 67537227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03056 251 403 Miscellaneous Gene Families AT3G02450 34.337 1.06e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03056 - K08900 gmx:100788420 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03056 1 67535369 67537227 Vivi1g03056 1 67535369 67537227 ECH