Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03052 ATGTCAAGAAAGCTTAAGAGAGTGATAGGAAATGGGGAGGACACATACGTGTGGACAAATCCATGGAGTGAGAATGTTCCTCTTAAAGATAGGTATCTGAGTCTGTTCTCGATTTGTCAAGATAAAAACATAAGAGCAAAGGACTTGGCAATAGGTGCAGGTCAATGGAACTTCAATTGGAATAGGAATTTGTTCCGAGAAGAGGCTGTGTTAACGGAGGAACTGAAGGAAAAATTGCAAAGGATTGTCATTAATTGTGAGAAAGAGGATGGGGTGTGGGATTCAGGGGTATATAGTGTTAAAGAGGCGTATAGTGTAATAACGGAGAATTCGATTGATGTTGAAAGGCTGAAACTAGCAGAAATTTGGAATAAATTTGTTCCTTTAAAAGTAGCAATTCTGTTAAACGCATATACATCAAAGCAAAACTACTTTGAAAGAAAGATAAAAGAAACAAGAATGGGACTACACATGAATGGGAGCGCTGAAGAAGTAAGCTATGCAAAAAACTCCTCACTTCAGCGAAAGGCGATTTCTTTGACAAAACCTTTGAGGGATGAAGCCATAACAAGTTTGTACAGCAACACACTGCCCAAAAGCTTGGCAATTGCAGACTTAGGTTGCTCTTCTGGACCAAACACATTGTTAGTGATCTCAGAATTTATCAAGGTGGTGGAAAATCTTTGTCGAGAACTTAATAAAAAATCTCCTGAATATAAAGTCTTTTTGAACGATCTATCGGAGAACGACTTCAACAGCATATTTATGTCTCTTGATACCTTTAAAGAAAAACTGCACCATGAAATGAAAAATGAAATAGGTCCTTGCTATTTCTTTGGAGTTCCTGGTTCCTTTTATGGCAGGACTTTTCCAGATAAAAGTTTGCATTTTGTTCATTCCTCTAACAGTCTTCATTGGCTTTCAAAGGTTCCAGAGGGTGTAGAGAGCAACAACAAGGGCAATATTTACCATTCTAGCACAAGCCCTTCAAATGTCCTCAAAGCTTACTACAAGCAATTTCAAAGAGATTTTTCTCTTTTTCTCCAGTGTCGTGCCCAAGAATTAGTTGAAGGTGGTTGCATGATTCTAACAGTTCCATCAAGTAAAGAGTCTGGGTACATTTGGGATCTCATGACAATAGTTCTTAATGACATGGTCTTGCAGGGAAGCATTGACGAAGAGAAATTCGATACTTTCAACATCCAAACATATTTTCCTACTCCATCCGAACTAAATATGGAAGTTCTCGAGGAAGGATCATTCGCAATCAATAAAGTTGAGATTTCTGAAGTGAATTGGAATGATCTTGATTGCGGGGAAGCTTTGGACATTGAATCTGAAATGTCAAAATCGATCAAAGACGATGGATACTAT 1374 0.3806 MSRKLKRVIGNGEDTYVWTNPWSENVPLKDRYLSLFSICQDKNIRAKDLAIGAGQWNFNWNRNLFREEAVLTEELKEKLQRIVINCEKEDGVWDSGVYSVKEAYSVITENSIDVERLKLAEIWNKFVPLKVAILLNAYTSKQNYFERKIKETRMGLHMNGSAEEVSYAKNSSLQRKAISLTKPLRDEAITSLYSNTLPKSLAIADLGCSSGPNTLLVISEFIKVVENLCRELNKKSPEYKVFLNDLSENDFNSIFMSLDTFKEKLHHEMKNEIGPCYFFGVPGSFYGRTFPDKSLHFVHSSNSLHWLSKVPEGVESNNKGNIYHSSTSPSNVLKAYYKQFQRDFSLFLQCRAQELVEGGCMILTVPSSKESGYIWDLMTIVLNDMVLQGSIDEEKFDTFNIQTYFPTPSELNMEVLEEGSFAINKVEISEVNWNDLDCGEALDIESEMSKSIKDDGYY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03052 458 Gene3D - 156 438 IPR042086 -
Vivi1g03052 458 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 156 447 IPR005299 GO:0008168
Vivi1g03052 458 FunFam Jasmonate O-methyltransferase, putative 180 311 - -
Vivi1g03052 458 Pfam SAM dependent carboxyl methyltransferase 187 441 IPR005299 GO:0008168
Vivi1g03052 458 Gene3D Vaccinia Virus protein VP39 170 432 IPR029063 -
Vivi1g03052 458 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 156 437 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03052 Vivi-Chr1 67253259 67260481 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03052 K21483 - gmx:100813166 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03052 1 67253259 67260481 Vivi1g03052 1 67253259 67260481 ECH