Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03040 ATGAAGAACTTGGCTTCGCTTGCCGCTTCAACCGCAACATTTCCCACACACCAATTCCCCTTTCAAATTCAACACTCTTTCTTTCCGCTTCAATTCACTTCCCGAACTTCCTTCCTCCGAAATCTACATCTATGCTGCCAAACCAAACAATGTCGTTCCAACGCATTTTCCACCAAACAAGACCTTATCGCACTTCAACAACAACTAGAAGAAGATGAAGAAGAACAGAGAGCTTCATTTTCAGATGATGATACATCTTTCTTATCCCTCAGCGAGAAACCCGACCGCAATTTGGGTTTGCTCGATGATTATGAGACTGAAGAACTCGGTTATGATTGCGATCCCAATCACCGAAGCGGGTATGTGGCTTTACTTGGAAAACCAAATGTTGGGAAGAGTACACTCGCGAACCAAATGGTTGGCCAAAAGTTGTCTATAGTTACGGATAAACCTCAAACAACAAGGCATCGGATTCTTTGTATATGTTCCGGCTCGGATTATCAGATGGTACTTTATGATACTCCTGGTGTTTTGCAAGAGCAAAGGCACAAGTTAGACTCAATGATGATGCAAAATGTTCGCAGCGCTGCAGTTAATGCTGACTGTGTACTGTTTCTCGTTGATGCATGTAAAGCGCCTGAAAAAATCGATGAAGTGTTAGAAGAAGGTGTAGGGAACTCCAAAAATAAACCCCCCACTCTATTGATTATGAACAAGAAGGATCTTATCAAACCCGGTGAAGTTGCGAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGATGAGGTTATACCAGTTAGTTCCAAGTACGGTCAAGGGGTTGAAGATGTCAAGAACTGGATACTGTCAAAGCTTCCTAAAGGACCAGCTTATTATCCAAAGGACATTATCAGTGAACATCCTGAAAGATTTTTTGTAGCTGAAATCATAAGAGAAAAGATTTTTTTGCAGTATCGAAATGAAATCCCCTATGTGTGTCAGGTGAATGTTAAAAGCTATAAGACCCGACCAAAAGCAAAAGATTTTATACAGGTGGAGATTTTGGTAGAGAGAAACTCCCAGAAGATTATCGTTATTGGAAAAGAAGGAAAAGCTTTAAAACTGCTTGCAACAGCTGCCCGCCTTGACGTTGAAGATTTTCTGCAGAAGAAAGTTTTTCTTGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTTAAGAACTCTGGTTATGGTGGTCAAATAGGTGTTGTATAA 1254 0.4043 MKNLASLAASTATFPTHQFPFQIQHSFFPLQFTSRTSFLRNLHLCCQTKQCRSNAFSTKQDLIALQQQLEEDEEEQRASFSDDDTSFLSLSEKPDRNLGLLDDYETEELGYDCDPNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGSDYQMVLYDTPGVLQEQRHKLDSMMMQNVRSAAVNADCVLFLVDACKAPEKIDEVLEEGVGNSKNKPPTLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSSKYGQGVEDVKNWILSKLPKGPAYYPKDIISEHPERFFVAEIIREKIFLQYRNEIPYVCQVNVKSYKTRPKAKDFIQVEILVERNSQKIIVIGKEGKALKLLATAARLDVEDFLQKKVFLEIQVKVKENWRQDEGFLKNSGYGGQIGVV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03040 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 320 IPR027417 -
Vivi1g03040 417 CDD KH-II_Era 308 394 - -
Vivi1g03040 417 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 118 288 IPR030388 GO:0005525
Vivi1g03040 417 NCBIfam GTPase Era 120 393 IPR005662 GO:0003723|GO:0005525
Vivi1g03040 417 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 295 410 IPR009019 GO:0003723
Vivi1g03040 417 FunFam GTPase Era 299 413 - -
Vivi1g03040 417 Gene3D - 115 299 IPR027417 -
Vivi1g03040 417 ProSiteProfiles Type-2 KH domain profile. 319 396 IPR004044 GO:0003723
Vivi1g03040 417 Hamap GTPase Era [era]. 117 410 IPR005662 GO:0003723|GO:0005525
Vivi1g03040 417 Coils Coil 55 75 - -
Vivi1g03040 417 NCBIfam small GTP-binding protein domain 122 280 IPR005225 GO:0005525
Vivi1g03040 417 PANTHER GTPASE ERA 70 402 IPR005662 GO:0003723|GO:0005525
Vivi1g03040 417 Gene3D - 300 414 IPR015946 -
Vivi1g03040 417 FunFam GTPase Era 115 298 - -
Vivi1g03040 417 CDD Era 117 286 IPR030388 GO:0005525
Vivi1g03040 417 Pfam KH domain 322 399 IPR004044 GO:0003723
Vivi1g03040 417 Pfam 50S ribosome-binding GTPase 122 239 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03040 Vivi-Chr1 66905309 66908945 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03040 K03595 - gmx:100815820 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03040 1 66905309 66908945 Vivi1g03040 1 66905309 66908945 ECH