Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03015 ATGATAAGAGCAGTGCTGGTGATGAACACGCAAGGGAAGCCTCGTCTTGCTAAATTCTACGAATTTCGGCCTGTGGAAAAGCAGCAGGAAATCATCCGAAATGTGTTTGCAGTCTTATGCAGTAGACCTGAACATGTTAGCAATTTTGTGGATGCCGAGTCCATCTTTGGCCAGGATGCTCGACTTGTCTACAAGCACTTTGCAACTCTATATTTTGTTCTCATATTTGATGGTTCTGAAAATGAGCTTGCTATGCTTGATTTGATTCAAGTCTTTGTTGAAACACTGGACAAATGCTTCAGAAATGTATGTGAGCTTGATGTCGTGTTCAACTATAGTAAGATGCATACTATACTAGATGAGATTATTTTCGGAGGCCAGGTGTTAGAGACAAGTTCAACCGAGGTTATGAAGGCTGTTGAAGAAATATCAAAGCTTGAAGCCGCATCCAGTGCAATCAATCTTGTTTCGAAATCTGTTTCTAGTTGGAGGTCGCGGTAG 501 0.4152 MIRAVLVMNTQGKPRLAKFYEFRPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESIFGQDARLVYKHFATLYFVLIFDGSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHTILDEIIFGGQVLETSSTEVMKAVEEISKLEAASSAINLVSKSVSSWRSR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03015 166 Coils Coil 129 149 - -
Vivi1g03015 166 Pfam Clathrin adaptor complex small chain 1 146 IPR022775 -
Vivi1g03015 166 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 147 IPR016635 GO:0015031
Vivi1g03015 166 SUPERFAMILY SNARE-like 1 145 IPR011012 -
Vivi1g03015 166 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vivi1g03015 166 Gene3D - 1 160 - -
Vivi1g03015 166 CDD AP3_sigma 1 145 IPR027155 GO:0006896|GO:0030123
Vivi1g03015 166 PIRSF AP_complex_sigma 1 156 IPR016635 GO:0015031
Vivi1g03015 166 FunFam AP complex subunit sigma 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03015 Vivi-Chr1 66430531 66435899 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03015 K12399 - tcc:18610934 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03015 1 66430531 66435899 Vivi1g03015 1 66430531 66435899 ECH