Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03009 ATGTTTCTTCTTAGAAAGCAAACCCAGAATCAGCCAGAGAATGCTTCCTCAAATCATGATGCTAAGGTGGCTGAACTGAGAACTGCTATTGGGCCCTTATCCGGGCGTCCATTGATGTATTGCACAGATGCATGTTTAAGGAGATATTTAGAAGCTCGAAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAATCACTCAAGTGGAGATCTACTTATAAACCTGAGGAAATCCGCTGGTCTGAAGTAGCACATGAGGGCGAGACGGGAAAAGTATCCCGAGCTAATTTTCATGATAGACTTGGGAGGACAGTGCTTATTATGAGACCAGGGATGCAGAACACAAAATCCCCAGAAAATAATATCAAGCATTTAGTCTATCTGTTGGAAAATGCTGTACTTAATCTTTCCGATGGTCAGGAACAAATGTCATGGTTGATAGACTTCACAGGATTTTCATTTAGCACAAATGTTGCTATTAAAACTGCTCGTGATATTATTCACATTTTGCAAAACCACTATCCAGAAAGGCTTGCTATTGCTTTTCTGTATAATCCACCAAGAATATTTCAGGCTTTCTGGAAGGCTGTAAAATACTTCCTGGATCCCAAGACAGCCCAGAAGGTAAAGTTTGTTTATCTCAACAATAAAGACAGTGTGGAGCTGATGAAATCACTCTTCGACATGGAAAATCTTCCTAGTGAATTTGGCGGGAAAGCTACTTTAAAGTATGACCATGAAGAGTTCTCACAGTTAATGACCGAAGATGATGTTAAAACTGCAAAGTTCTGGGGACTTAATGATGAGAAGCCCTTCACTACTAAGAATGGCCATGGCGGGGCAGAGGTAGCACCAGAACCCGTGGGCAGTATCGTTAGTTGA 885 0.4136 MFLLRKQTQNQPENASSNHDAKVAELRTAIGPLSGRPLMYCTDACLRRYLEARNWNVDKAKKMLEESLKWRSTYKPEEIRWSEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTKSPENNIKHLVYLLENAVLNLSDGQEQMSWLIDFTGFSFSTNVAIKTARDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAVKYFLDPKTAQKVKFVYLNNKDSVELMKSLFDMENLPSEFGGKATLKYDHEEFSQLMTEDDVKTAKFWGLNDEKPFTTKNGHGGAEVAPEPVGSIVS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03009 294 SUPERFAMILY CRAL/TRIO N-terminal domain 6 83 IPR036273 -
Vivi1g03009 294 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g03009 294 Pfam CRAL/TRIO, N-terminal domain 39 66 IPR011074 -
Vivi1g03009 294 CDD SEC14 99 240 IPR001251 -
Vivi1g03009 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vivi1g03009 294 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Vivi1g03009 294 SUPERFAMILY CRAL/TRIO domain 81 257 IPR036865 -
Vivi1g03009 294 PANTHER GH16843P 8 270 - -
Vivi1g03009 294 Gene3D - 3 271 IPR036865 -
Vivi1g03009 294 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Vivi1g03009 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vivi1g03009 294 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g03009 294 SMART sec14_4 87 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03009 Vivi-Chr1 66374752 66378046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03009 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 28.293 6.61e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03009 K26544 - gmx:100800024 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03009 1 66374752 66378046 Vivi1g03009 1 66374752 66378046 ECH