Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03007 ATGTGGCGTTGCGTGGTTCGTACTCTTTCCGAGAGATCCAACCCTAATATTCAACCACTTAGATCTCACCTTTCAAGATTTTTCTCTAGTGGTGGAAATTCGTCGTACAATGTGGTGGATCATAAGTACGACGCGGTTGTTGTTGGTGCTGGTGGCGCAGGATTGAGAGCTGCTATTGGACTTTCAGAACATGGCTTCAACACTGCATGCATTACCAAACTCTTTCCAACTCGTTCTCATACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTATGATACAGTCAAGGGAAGTGATTGGCTAGGAGACCAAGATGCTATCCAATATATGTGTAGAGAGGCACCAAAAGCAGTCATTGAACTTGAAAATTATGGTTTGCCATTTTCACGAACCGAAGATGGAAGAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTGGTCAGGCATATCGTTGTGCGTGTGCTGCCGATCGAACAGGGCATGCTCTACTGCACACTCTCTATGGCCAGGCTATGAGGCATAATACACAGTTTTTTGTGGAATATTTTGCGCTGGATCTATTAATGAATAGTGATGGTACTTGCCAAGGAGTAATAGCCTTGAATATGGAGGATGGAACTTTACACCGTTTTCAAGCTGCTTCAACAATTTTGGCCACTGGGGGTTATGGTAGAGCATACTTTTCTGCAACTTCTGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCTCGTGCTGGACTACCACTCGAGGATTTAGAGTTTGTGCAATTTCACCCAACAGGTATATATGGAGCTGGTTGCCTTATCACAGAAGGCTCTCGTGGTGAAGGTGGAATTCTTAGGAACAGTGAAGGTGAGAGGTTTATGGAAAGATATGCTCCTACTGCAAAGGATCTCGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGGCCAGAGAAGGATCACATATATCTCCACTTGAATCACTTACCCCCAGATGTTCTTAAGGAGAGACTACCTGGTATATCTGAAACTGCTGCGATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTACCAACTGTGCATTATAACATGGGTGGTATCCCCACTAATTATCACGGAGAGGTGGTTACCATTAAAGGTGACAATCCGGATGAAATAATTCCCGGGCTAATGGCGGCTGGGGAAGCAGCCTGTGCGTCAGTCCATGGTGCCAATAGGCTAGGTGCAAATTCACTTCTGGACATTGTTGTTTTTGGCAGAGCCTGTGCAAACAGAGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAAGACGCTGGTATGAAAACAATTGCTTGGCTTGACAAATTGAGAAATTCAAATGGATCATTGCCCACTTCGAAAATTAGGTTGAACATGCAACGAATAATGCAAAATAATGCTGCTGTATTCCGCACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATGGAGCATGGGAGAGCTTTCATGATGTTAAGTTGAAGGATCGGAGTTTAATATGGAACTCTGACCTGATTGAGACTATTGAGTTGGAAAACCTCTTGATAAATGCCAGCATTACCATGCACTCTGCTGAAGCCAGAAAAGAAAGCAGAGGTGCTCATGCCCGCGAAGACTTCACGACTAGAGACGATGAGAAGTGGATGAAACACACTTTGGGATATTGGGAAAATGAGAAGGTCCGGTTAGATTACAGGCCAGTGCACATGAATACATTGGATGATGAGGTCGAATCATTCCCTCCTAAAGCTCGCGTCTATTAA 1884 0.4411 MWRCVVRTLSERSNPNIQPLRSHLSRFFSSGGNSSYNVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDNPDEIIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDGAWESFHDVKLKDRSLIWNSDLIETIELENLLINASITMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03007 627 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 486 627 IPR037099 GO:0016491
Vivi1g03007 627 Pfam Fumarate reductase flavoprotein C-term 496 627 IPR015939 GO:0016491
Vivi1g03007 627 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 282 385 IPR027477 -
Vivi1g03007 627 Gene3D - 44 451 IPR036188 -
Vivi1g03007 627 PIRSF SDHA_APRA_LASPO 33 617 - -
Vivi1g03007 627 SUPERFAMILY FAD/NAD(P)-binding domain 37 463 IPR036188 -
Vivi1g03007 627 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 44 627 IPR014006 GO:0016627|GO:0022900|GO:0050660
Vivi1g03007 627 NCBIfam succinate dehydrogenase flavoprotein subunit 41 627 IPR011281 GO:0006099|GO:0016627|GO:0050660
Vivi1g03007 627 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 386 451 - -
Vivi1g03007 627 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 33 257 - -
Vivi1g03007 627 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 579 627 - -
Vivi1g03007 627 Gene3D - 467 577 - -
Vivi1g03007 627 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 466 582 - -
Vivi1g03007 627 Gene3D succinate dehydrogenase protein domain 578 627 - -
Vivi1g03007 627 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 272 390 IPR027477 -
Vivi1g03007 627 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 282 385 - -
Vivi1g03007 627 Pfam FAD binding domain 44 440 IPR003953 -
Vivi1g03007 627 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 78 87 IPR003952 GO:0016491
Vivi1g03007 627 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 28 627 IPR030664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03007 Vivi-Chr1 65998804 66003924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03007 K00234 - gmx:100802169 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03007 1 65998804 66003924 Vivi1g03007 1 65998804 66003924 ECH
Vivi2g03062 2 130446715 130453058 Vivi1g03007 1 65998804 66003924 PCT