Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02645 ATGACCACCACACCTTATCCACAACAACCACCTTCACGTGCCTTTCTAAACACAATCCAAGAAATCACTCAAATCTACTCTTCACTGCCACCTAGACCTTCCATAGAAGAAGTAGAAGCTGCCACTTCCACTCTTGACACCCTTAACAACGTGGAACAAACCAAACTCCAAGATATCTCAAACCAAAAACTACCACAAGATGTTCCTGAGGAGCTTTTCTCTGTTCTTCAAGAACTCAAGAACACCATGGTCCTCTTTCAAAGTCATCAACTGAGAAAAGAAGCTATTCACCTTCTTCAACTTGAAAAGATGTTTCAAACCTTTGGTGATCTCATTCAAAGAGCTTCTGAATTTGTTTCTCCTGATGATGAAGATACACAGAAAAAGAAAGTTTCCACTTTAAGAGAAACTGTGGTTACTTATGAAAAAGAGGAACATGAAGAATCTCAAAACAGTGATGAAGTTTTTGAACCTCAAAAGGGTTCCTCACTACACAAGCAGCTTTTGATAACAGTAGATGGAAGCACTGAGAAACTGAGTCTAATGAAAGTGGCTACTATGATTGAAAATTGTGCTAATAACAAAGACACAACCCTTGAGCTTAGAGGAAAATTAGTGGATCAAATGGAATGGTTACCACTATCAATTGGGAAACTATCTGATGTAACTGAAATAGACTTATCTGAAAACAGAATCATGGCTCTTCCAACAACAATCATAGGTCTAAAAGCTTTAACAAAGCTTGATCTTCATTCAAACCAGCTCATAAACCTTCCAAACTCGTTCGGCGAATTGATAAACCTTATTGAACTTGACCTTCATGCCAATAGATTGAAATCACTTCCTGATAGTTTCGGAAACTTGACGAATCTCGTTGATCTTGACATAAGTTCAAATGATTTCAAACAGTTACCTGAGTCAATTGGGAGTTTGATCAGCTTAAAGAGACTAAGTGCTGAAACTAATGAGATTGAGGAACTACCTTTCACAATTGGAAACTGTTCTTCACTAAGTGTGTTGAAGCTAGATTTCAATGAACTCAAAGCACTTCCAGAAGCTATAGGGAAACTTGAGAGTTTGGAGATTCTCACTTTGCACTATAATAGAATCAAGAAGTTGCCTACAACAATTGGTAATTTAAGTAACTTGAAGGAACTTGATGTTAGTTTCAATGAACTTGAATTCGTACCGGAGAATCTTTGTTTTGCGGTAAATTTGAAGAAACTTAACTTGGGAAAGAATTTTGCTGATCTAAGAGCATTGCCAAGATCAATTGGAAACCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAAAGCTTTGCCTGAGTCTTTTAGGTTCTTGTCTAAGTTAAGAGTTTTTCGAGCTGATATAACTCCTCTTGAGTTGCCACCAAAAGAAGTTGTCAAGTTGGGTGCTCAGGAAGTTGTGAAGTATATGGCTGATTATGTCAACAATAGGGATGCACAACTCTTGTCATCAAAGAAGAAAAAGAAGGGAATTTGGTTTTGGTTTTGTTCTATATGTTGGCCTAAGCAAGAATGA 1554 0.3719 MTTTPYPQQPPSRAFLNTIQEITQIYSSLPPRPSIEEVEAATSTLDTLNNVEQTKLQDISNQKLPQDVPEELFSVLQELKNTMVLFQSHQLRKEAIHLLQLEKMFQTFGDLIQRASEFVSPDDEDTQKKKVSTLRETVVTYEKEEHEESQNSDEVFEPQKGSSLHKQLLITVDGSTEKLSLMKVATMIENCANNKDTTLELRGKLVDQMEWLPLSIGKLSDVTEIDLSENRIMALPTTIIGLKALTKLDLHSNQLINLPNSFGELINLIELDLHANRLKSLPDSFGNLTNLVDLDISSNDFKQLPESIGSLISLKRLSAETNEIEELPFTIGNCSSLSVLKLDFNELKALPEAIGKLESLEILTLHYNRIKKLPTTIGNLSNLKELDVSFNELEFVPENLCFAVNLKKLNLGKNFADLRALPRSIGNLEMLEELDISDDQIKALPESFRFLSKLRVFRADITPLELPPKEVVKLGAQEVVKYMADYVNNRDAQLLSSKKKKKGIWFWFCSICWPKQE 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02645 517 ProSiteProfiles Leucine-rich repeat profile. 244 265 IPR001611 GO:0005515
Vivi1g02645 517 FunFam Plant intracellular Ras-group-related LRR protein 4 178 486 - -
Vivi1g02645 517 ProSiteProfiles Leucine-rich repeat profile. 359 380 IPR001611 GO:0005515
Vivi1g02645 517 SUPERFAMILY L domain-like 190 458 - -
Vivi1g02645 517 Pfam Leucine rich repeat 336 393 IPR001611 GO:0005515
Vivi1g02645 517 Pfam Leucine rich repeat 260 301 IPR001611 GO:0005515
Vivi1g02645 517 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Vivi1g02645 517 SMART LRR_bac_2 334 353 - -
Vivi1g02645 517 SMART LRR_bac_2 428 447 - -
Vivi1g02645 517 SMART LRR_bac_2 242 261 - -
Vivi1g02645 517 SMART LRR_bac_2 380 399 - -
Vivi1g02645 517 SMART LRR_bac_2 288 307 - -
Vivi1g02645 517 SMART LRR_bac_2 265 284 - -
Vivi1g02645 517 SMART LRR_bac_2 311 330 - -
Vivi1g02645 517 SMART LRR_bac_2 357 376 - -
Vivi1g02645 517 Gene3D Ribonuclease Inhibitor 165 505 IPR032675 -
Vivi1g02645 517 PANTHER LEUCINE-RICH REPEAT-CONTAINING 291 473 - -
Vivi1g02645 517 SMART LRR_typ_2 219 241 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 357 379 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 311 334 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 288 310 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 242 264 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 428 450 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 335 356 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 265 287 IPR003591 -
Vivi1g02645 517 SMART LRR_typ_2 380 403 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02645 Vivi-Chr1 56029409 56032043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02645 291 460 Receptor kinase-like Gene Family AT3G11080 33.146 1.50e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02645 - - lja:Lj0g3v0066329.1 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02645 1 56029409 56032043 Vivi1g02645 1 56029409 56032043 ECH