Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02475 ATGGCAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGTGCTGAGGCTGCTAGGATTAGGGAGAAATACCCGGACCGAATTCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTTACAGTTGGACAGTTTGTCTATGTTATCCGAAAAAGAATTAAACTAAGTGCAGAAAAGGCAATCTTTATTTTTGTGGACAATGTCCTTCCACCTACAGGAGCAATAATGTCAGCCATATATGATGAGAAGAAGGATGAAGATGGGTTTCTTTATGTTACTTACAGTGGAGAGAACACCTTTGGGGATCTGATTTACCAGTAG 369 0.4092 MAKSYFKQEHDLEKRSAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLIYQ 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02475 122 CDD Ubl_ATG8 12 114 - -
Vivi1g02475 122 Gene3D - 1 117 - -
Vivi1g02475 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Vivi1g02475 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vivi1g02475 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vivi1g02475 122 FunFam Autophagy-related protein 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02475 Vivi-Chr1 52201369 52203392 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02475 K08341 - gmx:100781703 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02475 1 52201369 52203392 Vivi1g02475 1 52201369 52203392 ECH