Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02472 ATGCACAAAAGCAGTTCTGGTTCATTAGGCCCAGACGGCCTCGACCTAACCCAATCCTTCTTCAAACCCATCTCCAACGCATCCCCTCCCTCTCTCACCAAACGCCACACCAAAATCTCCGTCATCGGCGCCGGAAATGTCGGAATGGCCATCGCTCAGACCATCCTCACTCAAGACCTCACCGACGAGCTCGTCATCGTCGACAACAAACCCGACAAGCTCCGCGGCGAGATGCTCGACCTTCAGCACGCCGCTGCTTTCCTCCCCCGCGTCAAGATCAACTCCTCCGTTGAATACTCCGTCACCGCCGGCTCTGATCTGTGCATCGTTACCGCTGGTGCACGACAGATCGCCGGTGAGTCGAGACTTAACCTTCTCCAGAGAAACCTCGCTCTCTTCAAAGGAATCATACCCGTTCTGGCACGTTACTCGCCGGAAACGGTTCTTATAATCGTGTCTAACCCCGTTGATGTTCTCACCTACATCGCGTGGAAGCTATCCGGGTTTCCATCGAACCGGATCATCGGGTCGGGTACTAATCTAGATTCTTCTCGCTTTCGTTTCCTCATTGCTGATCACCTCCAGGTCAACGCTCAGGATGTTCAGGCAAGCATAGTAGGGGAGCATGGGGATAGTTCAGTGGCATTATGGTCAAGTATCAGCGTTGGGGGAGTTCCTGTGCTGAGTTTTTTGGAGAAACAACAAATTGCTTATGAGAAAGAAACGTTGGAGAATATACACAAGCAAGTGATTGACAGTGCTTATGAGGTGATTAGTCTAAAAGGCTACACTTCATGGGCTATTGGGTACTCTGTGGCTAGTTTGGCTCGGTCGATAATTAGGGATCAAAGGAAGATTCACCCTGTGTCTGTTTTGGCTAAGGGGTTTTATGGCATTGGTGATGTTGAAGTGTTTTTGAGCTTGCCTGCACAGCTTGGGAGAGGTGGGGTACTTGGTGTGACTAATGTGCACATGAATCAAGAGGAGGAGCAAAGGCTTAGGGACTCTGCTAAAACCATCTTAGAGGTTCAGACTCAATTGGGTATTTGA 1050 0.5029 MHKSSSGSLGPDGLDLTQSFFKPISNASPPSLTKRHTKISVIGAGNVGMAIAQTILTQDLTDELVIVDNKPDKLRGEMLDLQHAAAFLPRVKINSSVEYSVTAGSDLCIVTAGARQIAGESRLNLLQRNLALFKGIIPVLARYSPETVLIIVSNPVDVLTYIAWKLSGFPSNRIIGSGTNLDSSRFRFLIADHLQVNAQDVQASIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKETLENIHKQVIDSAYEVISLKGYTSWAIGYSVASLARSIIRDQRKIHPVSVLAKGFYGIGDVEVFLSLPAQLGRGGVLGVTNVHMNQEEEQRLRDSAKTILEVQTQLGI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02472 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Vivi1g02472 349 Hamap L-lactate dehydrogenase [ldh]. 36 348 IPR011304 GO:0004459|GO:0005737
Vivi1g02472 349 Gene3D - 179 347 IPR015955 GO:0003824|GO:0016616
Vivi1g02472 349 FunFam Malate dehydrogenase 32 178 - -
Vivi1g02472 349 SUPERFAMILY LDH C-terminal domain-like 177 346 IPR015955 GO:0003824|GO:0016616
Vivi1g02472 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 17 347 - -
Vivi1g02472 349 ProSitePatterns L-lactate dehydrogenase active site. 206 212 IPR018177 GO:0004459
Vivi1g02472 349 Gene3D - 20 178 - -
Vivi1g02472 349 PIRSF Lac_mal_DH 33 349 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 176 IPR036291 -
Vivi1g02472 349 NCBIfam L-lactate dehydrogenase 41 340 IPR011304 GO:0004459|GO:0005737
Vivi1g02472 349 Pfam lactate/malate dehydrogenase, NAD binding domain 37 176 IPR001236 GO:0016491
Vivi1g02472 349 PRINTS L-lactate dehydrogenase signature 204 217 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 PRINTS L-lactate dehydrogenase signature 150 170 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 PRINTS L-lactate dehydrogenase signature 63 87 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 PRINTS L-lactate dehydrogenase signature 38 62 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 PRINTS L-lactate dehydrogenase signature 174 192 IPR001557 GO:0016616|GO:0019752
Vivi1g02472 349 CDD LDH_1 34 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02472 Vivi-Chr1 52154066 52155952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02472 K00016 - zju:107418882 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02472 1 52154066 52155952 Vivi1g02472 1 52154066 52155952 ECH
Vivi2g03709 2 147364205 147365673 Vivi1g02472 1 52154066 52155952 PCT