Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02469 ATGGCTTCCAAGGTTGCAATTATCCTTGTCCTTAACATTCTCTTTTTCACTGCTGTAACATCCAATTATGTTCCATGTCCTCCACCACCACCAAAAGGTCACAATCACCATCACTCACATCCAAAGAACCCAACATGTCCTAGAGACACAATTAAGTTTGGTGTGTGTGCTGATGTATTAGGTTTGATCAATGTTCAACTAGGTAAGCCACCAAAGACACCATGCTGTTCTCTCATTGATGGTCTTGCCAATCTTGAAGCTGCTGTCTGTCTTTGCACTGCTCTTAAGGCTAATATCTTAGGCATTAACCTTAATCTTCCCATTAATCTGAGCCTGGTACTTAATTACTGTGGAAAGGGAGTTCCAAAGGGGTTCGTTTGCGCTTAA 387 0.4186 MASKVAIILVLNILFFTAVTSNYVPCPPPPPKGHNHHHSHPKNPTCPRDTIKFGVCADVLGLINVQLGKPPKTPCCSLIDGLANLEAAVCLCTALKANILGINLNLPINLSLVLNYCGKGVPKGFVCA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02469 128 SMART aai_6 46 127 IPR016140 -
Vivi1g02469 128 Pfam Hydrophobic seed protein 45 128 IPR027923 -
Vivi1g02469 128 CDD HPS_like 43 127 IPR027923 -
Vivi1g02469 128 FunFam pEARLI1-like lipid transfer protein 1 44 128 - -
Vivi1g02469 128 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 48 127 IPR036312 -
Vivi1g02469 128 Gene3D - 38 128 IPR036312 -
Vivi1g02469 128 PANTHER - 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02469 Vivi-Chr1 52116302 52117067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02469 1 127 Acyl Lipid Metabolism Gene Families AT4G22520 29.134 1.81e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02469 - - mtr:11440205 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02469 1 52116302 52117067 Vivi1g02469 1 52116302 52117067 ECH