Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02462 ATGAACTCTTCTAGATCTTCAACCCTAGTTCTTTTTTCCATCATCAACATGCTTTTCTTTGTAATGGCAAATGGTTGCTTCTTTTGTCCAAAACCAAACCCTAACCCTAACCCATTTCCCTACCCAAACACAAGTCCTTCCACTAAGAGTTGTCCTAGAGATGCACTCAAATTAGGAGTATGTGCTAACTTGCTTAATGGACCAATTGGTGCAATTGTTGGGTCACCACCAGAACATCCTTGTTGTTCTATTTTAGAAGGACTAGTTGATCTTGAAGTTGCGGTTTGTCTTTGTACTGCCATTAAAGCTAACATTCTTGGCATTAACATTAATATTCCTATTTCACTTAGTTTGATCCTTAATGCTTGTGAGAAGAGTCCACCCAGTGATTTTCAGTGCTCTTAA 405 0.3852 MNSSRSSTLVLFSIINMLFFVMANGCFFCPKPNPNPNPFPYPNTSPSTKSCPRDALKLGVCANLLNGPIGAIVGSPPEHPCCSILEGLVDLEVAVCLCTAIKANILGININIPISLSLILNACEKSPPSDFQCS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02462 134 Pfam Hydrophobic seed protein 51 134 IPR027923 -
Vivi1g02462 134 SMART aai_6 51 133 IPR016140 -
Vivi1g02462 134 Gene3D - 47 134 IPR036312 -
Vivi1g02462 134 FunFam pEARLI1-like lipid transfer protein 1 49 134 - -
Vivi1g02462 134 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 53 133 IPR036312 -
Vivi1g02462 134 CDD HPS_like 48 133 IPR027923 -
Vivi1g02462 134 PANTHER - 7 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02462 Vivi-Chr1 51935718 51936386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02462 50 133 Acyl Lipid Metabolism Gene Families AT4G22490 38.095 1.18e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02462 - - gmx:100527818 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02462 1 51935718 51936386 Vivi1g02462 1 51935718 51936386 ECH