Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02445 ATGAGCAACGACTCTCCCTACACTCCTCTTCTTAATGGCTCCCACAATAACCACCGTAGAGAGCTTCTTCTTGTATTTTCCGGTTTGCTTTTACTTGCTTCGATAATCGCTTTTAGCGGTTACAGCGCTTCCTTCAGCGTACGTCAACCTCATGCTGACGTGTCAGCGGCTGCGTCGTCATCGATATTGTCCGATGAAGCAACGAAACCGAGCACGGTTTCGCGAGGTGTTTCTTCCGGTGTGTCGGAGAAGTCAAACACGTTTCTCTCTGGTAAGGTTGTTGGAGAAGGTGAATCGTTTCCTTGGGATAATACTATGTTGTCGTGGCAGAGAACGGCTTTTCATTTTCAGCCAGAGAAGAATTGGATGAATGATCCTAACGGTCCATTGTATTACAAGGGATGGTACCATTTTTTCTACCAATACAATCCAAATGGTGCAGTTTGGGGAGACATAGTTTGGGGGCATGCAGTGTCAAGAGACATGATCCATTGGCTTCACCTTCCACTAGCAATGGTGGCGGATCAATGGTATGACAGTAACGGTGTTTGGACAGGCTCTGCTACCATCTTACCTGACGGTCAAGTCATCATGTTATATACCGGTTCAACCAACGAGTTCGTGCAAGTTCAAAACCTTGCATACCCTGCTGATCTCAATGACCCTCTCCTTGTGGATTGGATCAAATACCCTTCCAACCCGGTTCTCGTCCCTCCACCAGGCATCCTTCCTAAGGACTTTCGTGACCCAACAACCGCGTGGCTTACTGCCGAAGGAAAGTGGCGAATCACCATAGGCTCCAAGATAAACAAAACTGGTGTGGCTTTGGTTTATGATACAGTGGATTTCAAGACCTATGAGCAGAAAGATGTGTTGCTTAATGCTGTTCCTGATACTGGTATGTGGGAGTGTGTGGACTTTTTCCCTGTTTCTATGAAGTCTGAAAATGGTTTGGATACTTCCTTTACCGGCGACGAGGTTAAGCATGTGATGAAGGTGAGTTTGGATGATGATAGACATGATTATTATGCATTGGGGACTTATGATGAGAAGAAGGTTAAGTTTATAGCAGATGATTTTGAAAATGATGTTGGTATTGGACTAAGGTATGATTATGGTATATTCTATGCATCCAAGACATTTTATGATCAGAAAAAGGATAGGAGATTGTTGTGGGGTTGGATTGGAGAATCTGATAGCGAATATGCTGATGTTGCCAAAGGTTGGGCTTCAGTTCAGAGCATTCCAAGAATTGTGAAGCTTGATAAGAAGACTGGTAGCAACTTAATTCAATGGCCTGTTGCAGAAGTGGAGAGTTTGAGATTAAGAAGTGATGAATTTAAAAATTTGAAGGTTAAGCCAGGGGCAGTGGTGTCACTAGATATTGGAACTGCTGCACAGTTGGATATTGTAGCTGAATTTGAGATAGACAAAGAAGCTTTGGAGAAAACAGCTCAGTCAAATGTGGAGTATGAGTGTAGCACGAGTGGCGGAGCTTCTCGTCGTGGTGCCTTGGGACCTTTTGGTCTTTATGTTTTGGCAGATGATGGTCTTTCTGAGTACACTCCTGTGTACTTTTATATTGTTAAAGGAAGCAATGGAAAACTCAAGACTTCTTTCTGCTCTGATCAATCAAGGTCTTCTCTAGCAAATGATGTTCATAAACAAATCTATGGAAGTGTAGTTCCAGTACTTGAAGGAGAAAAATTGTCCTTAAGGATATTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGAACATGTATAACATCAAGAGTTTATCCAACAAGGGCAATCTATGGAGCAGCTAGATTGTTCTTATTCAACAATGCTATTGAAACCAATGTCACAGCTTCTCTTAAAGTTTGGCAGATGAATTCTGCATTTATACGCCCATACCACCCTGATCAAAAGAGCCAAACAAGTTAA 1938 0.4278 MSNDSPYTPLLNGSHNNHRRELLLVFSGLLLLASIIAFSGYSASFSVRQPHADVSAAASSSILSDEATKPSTVSRGVSSGVSEKSNTFLSGKVVGEGESFPWDNTMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDSNGVWTGSATILPDGQVIMLYTGSTNEFVQVQNLAYPADLNDPLLVDWIKYPSNPVLVPPPGILPKDFRDPTTAWLTAEGKWRITIGSKINKTGVALVYDTVDFKTYEQKDVLLNAVPDTGMWECVDFFPVSMKSENGLDTSFTGDEVKHVMKVSLDDDRHDYYALGTYDEKKVKFIADDFENDVGIGLRYDYGIFYASKTFYDQKKDRRLLWGWIGESDSEYADVAKGWASVQSIPRIVKLDKKTGSNLIQWPVAEVESLRLRSDEFKNLKVKPGAVVSLDIGTAAQLDIVAEFEIDKEALEKTAQSNVEYECSTSGGASRRGALGPFGLYVLADDGLSEYTPVYFYIVKGSNGKLKTSFCSDQSRSSLANDVHKQIYGSVVPVLEGEKLSLRILVDHSIVESFAQGGRTCITSRVYPTRAIYGAARLFLFNNAIETNVTASLKVWQMNSAFIRPYHPDQKSQTS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02445 645 Pfam Glycosyl hydrolases family 32 C terminal 436 627 IPR013189 -
Vivi1g02445 645 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 119 445 - -
Vivi1g02445 645 ProSitePatterns Glycosyl hydrolases family 32 active site. 115 128 IPR018053 GO:0004553|GO:0005975
Vivi1g02445 645 Pfam Glycosyl hydrolases family 32 N-terminal domain 115 433 IPR013148 -
Vivi1g02445 645 Pfam Beta-fructofuranosidase, N-terminal domain 7 107 IPR021792 GO:0004564
Vivi1g02445 645 SMART glyco_32 115 588 IPR001362 GO:0004553|GO:0005975
Vivi1g02445 645 SUPERFAMILY Arabinanase/levansucrase/invertase 108 434 IPR023296 -
Vivi1g02445 645 Gene3D Glycosyl hydrolase domain; family 43 119 444 IPR023296 -
Vivi1g02445 645 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 104 631 - -
Vivi1g02445 645 Gene3D - 445 628 - -
Vivi1g02445 645 SUPERFAMILY Concanavalin A-like lectins/glucanases 433 632 IPR013320 -
Vivi1g02445 645 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 445 628 - -
Vivi1g02445 645 CDD GH32_Fruct1-like 121 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02445 Vivi-Chr1 51439636 51444003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02445 6 636 Glycoside Hydrolase AT1G12240 64.697 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02445 K01193 - gmx:100788844 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02445 1 51439636 51444003 Vivi1g02445 1 51439636 51444003 ECH
Vivi2g03726 2 147731343 147734461 Vivi1g02445 1 51439636 51444003 PCT