Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02272 ATGGTGGAAGAACGAGAGGCATTGGTAGCATGCAGCGATCAAAGCATGAGAATTGGAGTGACGATATGGGACATGAAAACAGGAGAAAAGATTATCCATATACCAACATGTTCTTCACCACCTTTTGGTTTGTTGTGTTTAAGAAATCAGTTCCTTGTGGCATCACAATTGAACAAACATGGATCTATGGGTGGTGGATCCATTGTTGTATGGCCCTTGAACAAGCCTCATCAACCGATTATGAATAACACAGTGGAAGCCATTGGGCCAATTTCTTGCACAAAAGATGGCATATACCTTGTGGGAGGTGGTTTATCTGGAAATGCTTATATTTGGAATGTGATTAATGGAAAATTGTTGAAGACTTGGGCAGCTCATTACAAATCTATAAAACACATAATGTTTTCAAATGATGATTCTCTTCTTGTTTCTGGTTCAGCTGATGGCATGTTGTGTGTTTGGTCCATGATAAGTTTGTTAGATGTGGAAGAATCAGAAAGCTACAATCCTTTATTACATCATTTGCCAGGGCATATGTCCTCAATAACAGGCCTTTTAGCTATACCTTGCAATTGTTATTCATTTATAATATCAAGTGCTATTGATGGAACATGCAAGGTTTGGGACTTTATCACTGGAAAGCTTGTGCAAACTCAAGGCTATCCTTTGGCAATAACTTGCATTGCCCTTCATGAAGGTGAAAGTCTTTTGTTTTGTGGTACAGAAAATGGAACAATATTTGTCAACAAACTTGATATTGGTTTGGAAGATGGTTTTAATTCAATTATTAGAGGAGATCAATCACTTGAACTCAAAGGACACAGTGGAGCCATTATTGCATTGACATCTAGTAGGACAAGCCTAATATCTTCTTCTGAAGACTGCACAATATGCATATGGGATGTCATCAACTGGACAATCACTCGAAGATTTAATCTTGAAAAAGGGAAAGTAACTAATCTCGTGGTAATACTTCGATCTTCGGCTCTCTCCACATCAAATCATACAAGAGGCTCCAATCAATACAATATCTCTCCATTGGGCAAGTCTCCTCTACAAATCAATGGACACAGTGAAACTACATCTCTTAATTCTTTGTGTCGCCTCTTCAAAGAAAAACAAACTCACATTGATTTAAGAAGCACTGGCTTATTGAGACAAAGCATTTATGGTCCACAGAAAGCACATGTGTCTATGGCCATGACCATGCAAATGAAAGTGGACAAAAATATTGAGAATCGTTCATGGGCAACAAAGATGGCAAAACATGTTATGGTGATAAACAGAAAGATGCAGTCACGACTGTTGGACTTGATACATCGTAGATTGTTTTGCACTAACAAAATAAACTCTCAAAAAAGAGGAATGGTGAGTATGAAGCAAAGGAAAGGGATCAAGAAGCCATAA 1407 0.3802 MVEEREALVACSDQSMRIGVTIWDMKTGEKIIHIPTCSSPPFGLLCLRNQFLVASQLNKHGSMGGGSIVVWPLNKPHQPIMNNTVEAIGPISCTKDGIYLVGGGLSGNAYIWNVINGKLLKTWAAHYKSIKHIMFSNDDSLLVSGSADGMLCVWSMISLLDVEESESYNPLLHHLPGHMSSITGLLAIPCNCYSFIISSAIDGTCKVWDFITGKLVQTQGYPLAITCIALHEGESLLFCGTENGTIFVNKLDIGLEDGFNSIIRGDQSLELKGHSGAIIALTSSRTSLISSSEDCTICIWDVINWTITRRFNLEKGKVTNLVVILRSSALSTSNHTRGSNQYNISPLGKSPLQINGHSETTSLNSLCRLFKEKQTHIDLRSTGLLRQSIYGPQKAHVSMAMTMQMKVDKNIENRSWATKMAKHVMVINRKMQSRLLDLIHRRLFCTNKINSQKRGMVSMKQRKGIKKP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02272 468 Pfam WD domain, G-beta repeat 269 301 IPR001680 GO:0005515
Vivi1g02272 468 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Vivi1g02272 468 Pfam WD domain, G-beta repeat 171 209 IPR001680 GO:0005515
Vivi1g02272 468 SUPERFAMILY WD40 repeat-like 19 334 IPR036322 GO:0005515
Vivi1g02272 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Vivi1g02272 468 Gene3D - 260 357 IPR015943 GO:0005515
Vivi1g02272 468 Gene3D - 3 248 IPR015943 GO:0005515
Vivi1g02272 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 302 IPR001680 GO:0005515
Vivi1g02272 468 PANTHER WD-REPEAT PROTEIN 18 6 438 IPR045227 -
Vivi1g02272 468 SMART WD40_4 264 301 IPR001680 GO:0005515
Vivi1g02272 468 SMART WD40_4 168 209 IPR001680 GO:0005515
Vivi1g02272 468 SMART WD40_4 116 155 IPR001680 GO:0005515
Vivi1g02272 468 SMART WD40_4 212 250 IPR001680 GO:0005515
Vivi1g02272 468 SMART WD40_4 73 113 IPR001680 GO:0005515
Vivi1g02272 468 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Vivi1g02272 468 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Vivi1g02272 468 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Vivi1g02272 468 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Vivi1g02272 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Vivi1g02272 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02272 95 307 Miscellaneous Gene Families AT5G08390 21.759 5.76e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02272 K14829 - gmx:102662801 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02272 1 48007484 48011840 Vivi1g02272 1 48007484 48011840 ECH