Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02256 ATGGAAGCCATGGCCGTCTTTTCCGGAAGCAATATCTGTGTTACATCCTCTCTCCTTCGCACCACCGACTCCAAAACCAGATACTCTCAATTACGCACCACCCAACACCTATCTGCATTTCCTTCTAAATCCCATCTCTTCTCACCTTCTACTACTTCTTCTTCCTATCCTAAAACCTTCCGTACCAGAAGCAGCACCAAATCCGGCATATTCCTTCCCACCTTAATCGCTTCTCTCGAACAAGTTGACCAGACTTACATTATGGTCAAACCTGATGGTGTTCAACGTGGCCTTGTAGGTGAAATTATTTCTAGGTTTGAGAAAAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTTCAATGCTCTAAAGAATTAGCTGAGGAGCATTATAAGGACCTAAGCCAGAAGTCTTTTTTCCCTAAGCTGATTGAGTATATTACTTCAGGTCCCGTTGTGTCTATGGCATGGGAGGGTGTTGGAGTAGTGGCATCAGCGCGTAAGCTTATAGGGGCTACCAATCCTCTTCAAGCCGAACCAGGCACAATAAGAGGAGACTTTGCTGTTCAAACAGGAAGGAATATTATTCATGGAAGTGACAGCCCTGAAAATGGAGAGCGTGAAATAGCTCTATGGTTCAAGGAAGGTGAATTATGCGAATGGACTCCCGTCCAACAACCATGGCTAAGAGAATAA 693 0.4444 MEAMAVFSGSNICVTSSLLRTTDSKTRYSQLRTTQHLSAFPSKSHLFSPSTTSSSYPKTFRTRSSTKSGIFLPTLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLSQKSFFPKLIEYITSGPVVSMAWEGVGVVASARKLIGATNPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQQPWLRE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02256 230 Hamap Nucleoside diphosphate kinase [ndk]. 82 217 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vivi1g02256 230 CDD NDPk_I 84 212 - -
Vivi1g02256 230 FunFam Nucleoside diphosphate kinase 79 230 - -
Vivi1g02256 230 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 77 229 - -
Vivi1g02256 230 Pfam Nucleoside diphosphate kinase 84 216 IPR034907 -
Vivi1g02256 230 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 229 IPR036850 -
Vivi1g02256 230 SMART ndk_5 82 219 IPR034907 -
Vivi1g02256 230 ProSitePatterns Nucleoside diphosphate kinases active site. 193 201 IPR023005 -
Vivi1g02256 230 Gene3D - 78 230 IPR036850 -
Vivi1g02256 230 PRINTS Nucleoside diphosphate kinase signature 129 148 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vivi1g02256 230 PRINTS Nucleoside diphosphate kinase signature 170 186 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vivi1g02256 230 PRINTS Nucleoside diphosphate kinase signature 85 107 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vivi1g02256 230 PRINTS Nucleoside diphosphate kinase signature 193 212 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vivi1g02256 230 PRINTS Nucleoside diphosphate kinase signature 149 166 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02256 Vivi-Chr1 47502800 47505495 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02256 K00940 - gmx:100500478 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02256 1 47502800 47505495 Vivi1g02256 1 47502800 47505495 ECH