Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02236 ATGGCAAAAGCTTGCAAATCGCAAGAAGAAGTTGCGATTGAAGCAATCAATCATGCTTTGAAAGCTCTTCGGAAACGCCATTTGCTCGAAGAAGCCGCTCACACTCCTGCTATTCTCGCACTATCAAAACCCATCGTTATCCAGGGCTCTGAATGGAAAGAGAAAACAGAGAACTTGGAATTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTGTCCGAGCAACTTGTTACGGAAGTAGCTGAGTCCAGAGTTTCAAAATCTTTGCTTCAAGAGAAAGAAGCTGCAATTGCTGAAATGCAGAAGGAGTTAACAGAATTAAGGGATGAGTGCGCTCAATTAAAGACGGATTTGGAACAAAAGGTTAAAGAAGTAGAATTAGTTGTGTGTGAGAATTCAGAACTTAAATCACAACTGAAGGAGGTGACTATTACAGCCAATAAAGCTGAGGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTAGAAAAAATGAAGGATGCTGAACGACTAAATGAGGCAAATGCACTGTACGAAGACATGGTTCAGCGGCTAAGAGCTAGTGGTCTAGAACAACTTGCAAGGGAACAGGTAGATGGGATTGTTCGGCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCGAACATCCCTTCCATGTGCAAATACAGGCTAAATGCACATGAAGGAGGTTGTGCATCCTTATTGTTTGAGTACAATTCTAGTAAATTGATTACTGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCTGTAAGTTCTAATCTTCATGGCTGCCTTGGCTCAGTATTGGATCTTGCTATCACACATGATAATCGATCTGTTATTGCTGCAAGCAGCTCAAATAATTTGTATGTATGGGATCTGAACTCGGGCCGGGTCCGTCATACCCTTACTGGACACTCAGATAAAGTTTGCGCTGTTGATGTCAGCAAGGTTTCAAGTCGTCATGTTGTCAGTGCAGGTTATGACCGCACAATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAATACAATCATGTTTCACAGCAACTGCAATGCTCTTTGCTTCAGCACAGACGGGCAGACCATATTCTCTGGACACGTTGATGGTAACCTCCGTTTATGGGACATTCAGTCCGGAAGGCTACTAAGTGAGGTTGCTGCGCATTCGCTTGCCGTCACATCAATATCCCTTTCTCGAAACGGAAATATTGCATTGACAAGTGGAAGGGATAATTTGCACAATTTGTTTGATGTTCGAACGCTGGAAGTTTGCGGCACATTAAGAGCTTCAGGAAACAAAGTAGCTTCAAATTGGAGTCGATCGTGTATCAGCCCAGACAACAATCACGTTGCTGCTGGGTCTGCTGATGGATCTGTTCATATATGGTCAATATCTAAAGGTGACATTGTGAGTACTCTGAAGGAGCATACTTCTTCGGTTCTCTGTTCTAGTTGGAGTGGAATGGGAAAACCTTTAGCGTCAGCTGACAGGAATGGGATTGTTTCCATCTGGTCATAA 1545 0.4291 MAKACKSQEEVAIEAINHALKALRKRHLLEEAAHTPAILALSKPIVIQGSEWKEKTENLELELQQCYKAQSRLSEQLVTEVAESRVSKSLLQEKEAAIAEMQKELTELRDECAQLKTDLEQKVKEVELVVCENSELKSQLKEVTITANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSMCKYRLNAHEGGCASLLFEYNSSKLITGGQDRSVKVWDTNTGSVSSNLHGCLGSVLDLAITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHSDKVCAVDVSKVSSRHVVSAGYDRTIKVWDLMKGYCTNTIMFHSNCNALCFSTDGQTIFSGHVDGNLRLWDIQSGRLLSEVAAHSLAVTSISLSRNGNIALTSGRDNLHNLFDVRTLEVCGTLRASGNKVASNWSRSCISPDNNHVAAGSADGSVHIWSISKGDIVSTLKEHTSSVLCSSWSGMGKPLASADRNGIVSIWS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02236 514 Gene3D - 358 514 IPR015943 GO:0005515
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Vivi1g02236 514 Coils Coil 91 125 - -
Vivi1g02236 514 CDD Atg16_CCD 88 176 - -
Vivi1g02236 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Vivi1g02236 514 FunFam Autophagy-related protein 16 210 514 - -
Vivi1g02236 514 CDD WD40 222 514 - -
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Vivi1g02236 514 Pfam Autophagy protein 16 (ATG16) 50 173 IPR013923 -
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Vivi1g02236 514 Gene3D - 68 357 IPR015943 GO:0005515
Vivi1g02236 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Vivi1g02236 514 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Vivi1g02236 514 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515
Vivi1g02236 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Vivi1g02236 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 13 486 IPR045160 GO:0000045
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Vivi1g02236 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Vivi1g02236 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Vivi1g02236 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Vivi1g02236 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Vivi1g02236 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Vivi1g02236 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Vivi1g02236 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Vivi1g02236 514 Coils Coil 169 189 - -
Vivi1g02236 514 SUPERFAMILY WD40 repeat-like 218 513 IPR036322 GO:0005515
Vivi1g02236 514 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02236 Vivi-Chr1 47017019 47019813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02236 310 513 Miscellaneous Gene Families AT5G08390 20.488 2.81e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02236 K17890 - gmx:100778336 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02236 1 47017019 47019813 Vivi1g02236 1 47017019 47019813 ECH