Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02235 ATGTTCCCTTCCTCAGCAACTCCTTTGTCTCCTCACTCTTCCATCCATCCTCATTCTGCACTCTCCACCATAATGAATGACTTCACCACCTTCCTCCACCTCCAACACAAACAAAAACCCCTCATGCAACCCTTCAACTACCAATATCTCACTTCCATCAAAACCCTAACACCTCATATCACTTGTCTCGCAGTCCACCGTAACCTTCTCTACGCCGCATCTCTTAACCTCATCAACGTCTTCGATCTCTCCTCCAATTACACCCTCATCGACACCTTCAACGAAACCTCCACTTCAGGTTTCGTAAAATCCATCACGTTTACCGGTTCAAGAGTCTTCACTGCTCACCAAGACTGTAAAATTCGAATCTGGCATATTACATCTTCAAAACAGCACTGTCTTGTTTCCTCACTTCCCACCGTTAAAGACCGGTTGCGCCGCTGCATCGTGCCTAAAAACTACGTGACTGTTCGACGTCACCGGAAGAGTCTTTGGATCAAACATAATGATACGGTGTCTGGTTTAGCAGTAAACGAGAAAGAGAAACTCATGTATTCTGTTTCTTGGGATAAAAGTTTCAAGATATGGGACTTGTCTTCCGGTTATTACCGGTGTTTGGAGTCTTTTCACGCGCACGATGACGCCATTAACGCTGTTGTTGTTTCGGAGGACGGTACTGTTTACACGGCTTCGGCTGATGGGAGCATCAAGGCTTGGAAGATGGATAATAAGGTGAAACGGTATTCTTTTGTGAGTGTAGGGAAGCAGAAACCAACTGTTAATGCGTTGGCGATGAACGGCGATGGGAAGGTTTTATTTTCCGGCGGGAGTGACGGGACGATATGCCGGTGGGAGAATAATAATAAGAAGAAGTGTGAGGAAAACAAGAACGTGGTGTTGATGGAAACGTTGAGGGGTCATAGTGGGGCGATACTATGTTTGGTGAACGTGAATGAATTGTTGATGAGTGGGTCAGCGGATCATACGGTGAGGATTTGGTGGAGGGAAAGAAGAGATGGTGGTTATTGTTGTAGGGGAGTGTTGGAAGGACATGAAAAACCGGTGAAGTCGTTAGTAGTAACTTCGGGTGGTGGTGAAGAGGATGATGGGGTGGTTAAGCTGTTTAGTGGAAGCCTTGACGGGGAGATTAGAGTGTGGGAGTGTTTGGTTTGA 1173 0.4629 MFPSSATPLSPHSSIHPHSALSTIMNDFTTFLHLQHKQKPLMQPFNYQYLTSIKTLTPHITCLAVHRNLLYAASLNLINVFDLSSNYTLIDTFNETSTSGFVKSITFTGSRVFTAHQDCKIRIWHITSSKQHCLVSSLPTVKDRLRRCIVPKNYVTVRRHRKSLWIKHNDTVSGLAVNEKEKLMYSVSWDKSFKIWDLSSGYYRCLESFHAHDDAINAVVVSEDGTVYTASADGSIKAWKMDNKVKRYSFVSVGKQKPTVNALAMNGDGKVLFSGGSDGTICRWENNNKKKCEENKNVVLMETLRGHSGAILCLVNVNELLMSGSADHTVRIWWRERRDGGYCCRGVLEGHEKPVKSLVVTSGGGEEDDGVVKLFSGSLDGEIRVWECLV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 249 IPR001680 GO:0005515
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 201 IPR001680 GO:0005515
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 333 - -
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 285 IPR001680 GO:0005515
Vivi1g02235 390 SUPERFAMILY WD40 repeat-like 44 387 IPR036322 GO:0005515
Vivi1g02235 390 Gene3D - 43 154 IPR015943 GO:0005515
Vivi1g02235 390 SMART WD40_4 341 387 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 159 197 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 46 82 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 243 285 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 86 125 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 297 334 IPR001680 GO:0005515
Vivi1g02235 390 SMART WD40_4 202 240 IPR001680 GO:0005515
Vivi1g02235 390 ProSitePatterns Trp-Asp (WD) repeats signature. 374 388 IPR019775 -
Vivi1g02235 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 387 IPR045182 -
Vivi1g02235 390 Gene3D - 255 389 IPR015943 GO:0005515
Vivi1g02235 390 Gene3D - 155 254 IPR015943 GO:0005515
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 243 - -
Vivi1g02235 390 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Vivi1g02235 390 Pfam WD domain, G-beta repeat 167 197 IPR001680 GO:0005515
Vivi1g02235 390 Pfam WD domain, G-beta repeat 257 284 IPR001680 GO:0005515
Vivi1g02235 390 Pfam WD domain, G-beta repeat 204 240 IPR001680 GO:0005515
Vivi1g02235 390 Pfam WD domain, G-beta repeat 344 386 IPR001680 GO:0005515
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 333 IPR001680 GO:0005515
Vivi1g02235 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 201 - -
Vivi1g02235 390 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Vivi1g02235 390 PRINTS G protein beta WD-40 repeat signature 374 388 IPR020472 -
Vivi1g02235 390 PRINTS G protein beta WD-40 repeat signature 184 198 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02235 Vivi-Chr1 47003839 47005369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02235 195 387 Acyl Lipid Metabolism Gene Families AT3G18860 24.020 1.93e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02235 - - vvo:131605524 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02235 1 47003839 47005369 Vivi1g02235 1 47003839 47005369 ECH