Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02194 ATGAAAAGATTCAAAGCAGCTCTTAGCAACCTCCGATTCATCAACTCGTCCTCCCCCATCCGAGTCACTCCAACTCGCTCGCCACAACTCACTCACAACCACCAGGTTTCTCACTTCTCTCTCCATATTTCACCACCCCATTTCGCCCCCTTTCAATTTCACGATTTTCGTTTCCCAACCACTCAACAAAAACGCAATTTTTCCTCGAAACCCAACTCCATTGTAGACCTTGTTTTGACCAACGCTTGGTCTCAAGGGTTCGAGCACGAGTTAGAAAAATGTTACCCATCTTTGACCCACGAAACCGTTGTTTACATTTTGAAGCATTTGGATAATGACCCACAAAAAGCTTCTAGCTTTTTCAATTGGGTTTGTAAGAAAGAATGGTTTTTGGCTAGTTCTTCATTGTGTAACCTAGTTCTTAGGATTTTAGCTAATAACATTACAATTGATCAATTTTGGGTTACTCTAACTATGATGAAGAAAAAAGGGTTCTATCTTGATCGAATGACGTATACAATGATTTTAGAGGGTTTTAGAAGAGAGAAAATGAATAGGGATTTTGCTTGTCTTAAAACCTTCTTTAAGCGAATGCTTAAGGAAAATGCAAGGCAAAGTGTTTTCAATAAGGTTGTTGGTGTCATTTCAGGATCTGAATGGGGTGATGAGGTTATGAATGAACTCGCGGAGCTTAAAATTAAATATTCGGATAGTTTTGTAATACGGGCTTTAAAAGAGCTCCGGGTTTGTCCTCTAAAGGCTTACAAGTTCTTTCAATGGGTTGGGGAGCAATCTGGTTATCAACAGAATTCAGTGACTTACAATGCAGTTGCTAGAGTTCTCGCTAGGCCTGGTTCGGTTGACGAGTTTTGGAGTGTTGTTGAGGAGATGAAGAGTGTGAATCATGAATTGGATATTGATACTTTTATGAATATAGAAATGCAGTTTGTGAAGAATCAGATGATGGAGGATGCTGTCAAGCTTTATGAGGTTATGATGAATGGTTCGTATGAGCCATCGGATCATGATTGCTGTGTCCTTTTAAATGCAATTGCTACAAGTGATTCGCCAAATTCTGAACTAGTTTTCAGGGTAACTGAGAAATATGAATCCAAAGGGCATACTCTTACAAAGGAAATCTATGATGGAATCCACAGGTGTTTGACAAGTGCCGGGAAATTTGATGAAGCAGAAAATATTGTTAAGACTATGAGAAATGCAGGCTATGATCAGGATAACACCACCTACAGTCAAGTGGTTTTTGGACTTTGTAAGATGAAGAGGGTCGAAGAAGCATGTAACGTTCTGGAGGAGATGGAATCTAGTGGATGCATCCCTGATAACAAAACTTGGTCCGTCTTGATCCAAGGGCTTTGTGCTGCCAATGAAGTAGAGAAGGCATCACTTTGTTTAATTACGATGGTTGAAAAGGGCTGCAATGCAGATGCAGATGTTATAGGCGTTATGGTTGACAGTTATCTTAGTCAAGAGAGAATAGATACTGCATACAAGTTTCTTGTTGAGATGGTTAGGAATCACGGCGCATCTCCTCGGCAACGTACATATGAGAAATTGATTGAAAACCTATTGGGAATAGGAAAAATTGAGGATGCAATTGATCTTCTATGTTGGATGCATAAACACAAGTACTCTCCATTCATCAAACCTATTGTGCAATATGTTTCAAAGTCTGGTACCGTGGAGGATGCTGAGAAATTCCTGAAGGCATGGAGAAAGAAAAGTCATATGTCCCATTCAGCCTATCTTCATGTTTTTGAATCTTTCGTCGGAGAAGGTAGACTCTCAGAAGCCAAAGATCTATTGTGCAAGTGTCCTTCTCGTATACAGAAACGTAAACAAGTCAGTGAATTTTTTGCTTCAGCGGAGAATCAGATCACTGCTACGGCTAGTGCTAATTGA 1920 0.3995 MKRFKAALSNLRFINSSSPIRVTPTRSPQLTHNHQVSHFSLHISPPHFAPFQFHDFRFPTTQQKRNFSSKPNSIVDLVLTNAWSQGFEHELEKCYPSLTHETVVYILKHLDNDPQKASSFFNWVCKKEWFLASSSLCNLVLRILANNITIDQFWVTLTMMKKKGFYLDRMTYTMILEGFRREKMNRDFACLKTFFKRMLKENARQSVFNKVVGVISGSEWGDEVMNELAELKIKYSDSFVIRALKELRVCPLKAYKFFQWVGEQSGYQQNSVTYNAVARVLARPGSVDEFWSVVEEMKSVNHELDIDTFMNIEMQFVKNQMMEDAVKLYEVMMNGSYEPSDHDCCVLLNAIATSDSPNSELVFRVTEKYESKGHTLTKEIYDGIHRCLTSAGKFDEAENIVKTMRNAGYDQDNTTYSQVVFGLCKMKRVEEACNVLEEMESSGCIPDNKTWSVLIQGLCAANEVEKASLCLITMVEKGCNADADVIGVMVDSYLSQERIDTAYKFLVEMVRNHGASPRQRTYEKLIENLLGIGKIEDAIDLLCWMHKHKYSPFIKPIVQYVSKSGTVEDAEKFLKAWRKKSHMSHSAYLHVFESFVGEGRLSEAKDLLCKCPSRIQKRKQVSEFFASAENQITATASAN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02194 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Vivi1g02194 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vivi1g02194 639 PANTHER OS01G0970900 PROTEIN 78 627 IPR044578 GO:0008380
Vivi1g02194 639 Pfam PPR repeat 384 408 IPR002885 -
Vivi1g02194 639 Pfam PPR repeat 272 299 IPR002885 -
Vivi1g02194 639 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Vivi1g02194 639 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Vivi1g02194 639 NCBIfam pentatricopeptide repeat 450 482 IPR002885 -
Vivi1g02194 639 NCBIfam pentatricopeptide repeat 415 447 IPR002885 -
Vivi1g02194 639 Gene3D Tetratricopeptide repeat domain 222 358 IPR011990 GO:0005515
Vivi1g02194 639 Pfam PPR repeat family 422 459 IPR002885 -
Vivi1g02194 639 Gene3D Tetratricopeptide repeat domain 474 635 IPR011990 GO:0005515
Vivi1g02194 639 Gene3D Tetratricopeptide repeat domain 359 473 IPR011990 GO:0005515
Vivi1g02194 639 Gene3D Tetratricopeptide repeat domain 68 212 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02194 Vivi-Chr1 46079938 46082799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02194 307 635 Glycosyltransferase AT1G05670 23.352 1.56e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02194 - - gmx:100801257 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02194 1 46079938 46082799 Vivi1g02194 1 46079938 46082799 ECH