Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02191 ATGGACTCTTCTCTCGTGATTAAGGCAAAGTATGGAGATACGCTCAGGCGTTTCAATGTTCGTGTCGATGAGAATAATCGACTTGATCTTAACATGGCTGGGTTGAGGGCTAAGATATGCTCTGTTTTCGGTTTCGCCACTGATGCTAATTTCATTCTGAGATATGTGGATGAGGATGGTGACTTGGTGAATCTTGTGGATGATGAAGATTTGCATGATGTGATGAGACAGCAATTGAAGTTCTTGAGAATTGATGTACATATGGTGAATAATTCTGATGGGAAATCTGTTGCTGATGGCTCTAGTGGAACTAGTGGAAGTGCTACTCCTCTAAGAGCTAATCCTGTCTCAGACCCGTTTCTTGCTGATGCTTTGCGAGCTCTGCCAGAGCCGATGCGCGAGGCTCTTTATTCGTCATTTTCAAAAGCCGCGAATTCAAATCCAGTGCTTGCAAATATTGCTGATTCAATTTCCAAAATTGGACAATCCATTCTAAAGCCTCAAGGAAATTCTGATACTGCAGGTGGCTCAGGCTCAAACAAAGGTGTTCCCGGTGAATCTGTCACTCCAGAAGCAAAAGGTCCACAGTCTCCATCTGTGGATTCTGCTTCTGCTGTTTCATATGTTGTGCCAAAAGCACCGCAGGAGGCTCTATTGCGTTCAAAAGTTTTATCTGCAAGACAAGGGCAGGAGGCTCTATCTACTGCATCACCTGCAAAACAAGTGCAGGATGCTCTATCTAGTTTATCACTCTCAAAAGCTGCATCTGCACGACAACTGCTTCGCAACTTATCTAATAACCGGGGCCCATCTTTTGCACCTGGCCCAAGCTCCAAAAATAATCTTGGTGAAGAACTAGTCACTTCCGAATCAAGAGGTCCGCAGTTTCCATTTCTGGGCTCTGTTTCCGGTGTCAATAGCCAGGCGGCACCCTACAATGTCAGACAACATGTTGAGGCCGAAAACATGAATGGAAATGTACTGGGGGCCTCCGGTGCTGGTCGACAGGTGGAGTCTGGAAATGCAGGAATTGCTCCGGTTGATCTCAGTTCATCAACTAATGTAAATAGAGTACCACTCTCATCTGCAGTTCCTGTTAGTGCTGACAAGGGTAAAGCGTCTTTTGTTGACAGTGTTGTTAGTAAGGATGAAAAAGTTCCTGATAATGTTAACAAGGGTAAAGCGTCTATTGATGACAGTTTTACCAAGAATCCTGCTATAAGTTTCGGTGCTCCTATTGACTGCCCATTTTCTGGGACACATACTCCTTATCCAATGCCACCTCCGCTAGGTAACTTTCGCTTTAAAAGGAGCCACAGTCACTCTGATGCATCGAATGGTATGTTTCACAAGGGTGTCCGCTGTGATGGCTGTGGAGTGTATCCAATAACTGGACCTCGTTTCAAATCCAAAATAAAAGAAAACTATGACCTCTGCAGTATTTGCTTCAATGAATTTGGTAATCAGACTGATTATATCAGGATGGACCGTCCTGCTTCTTTTCGGGGTCCAAGATGTTTATATCAGAATACCAGAGAATTTAGGCTTCCAAAGATAGCACCACATATTATTTTAAAAACAGGTGCGAAGCATGGAAGGCCAAGGCTAGATAGTCGGTTCATTTTGGATGTCAATGTTATAGATGGTACAATGATGGCTCCATCTACTGCGTTCACTAAGATCTGGCGGATGCGCAACAATGGCACAACAGCGTGGCCCAAGGGAACTCAACTTGTTTGGATTGGAGGGGACAAATTAAGTGAATTAGATTCTGTTGACTTGGAGGTTCCCGATTCTGGTGTATCCTCAGAGATGGAGCTTGACATTGCAGTTGATTTTATTGCACCCCAGTTACCTGGTAGATACATATCATACTGGAGGATGTCATCTCTCTCTGGACATAAATTTGGCCAACGGGTTTGGGTCCTTATACAGGTTGATGCTTCTCTCAAGGACTCATTCTATGATAGCTCTCAAGGCTTAAACTTGAATATTCCCCTTGGTGTGGGTAGCTCTGAAGAGCCTCAGATTATAGATATCAATGTTCAACCTGTTGAGGATGATGCTTTTCATCAACCCAAAAATCCTAATGCTCCACCTGAACCTGTGAGTCAAATGGTTGATAAGGAACTAAGGCAGGAACTGGGAAATGAATTTCCTACAAATAAAGCTACATTTGTTGGCCCTGCCGCCTCAGCCCCTAAGATTTCGGAAGCATCTTCATCTGTTTCTTACCCCATCATTGATTTCTCTGGCTCAGCCCCTACAATTTCTGCTGCACCTCCAACTGTTTCTTATCCCATAATAGACTTATCTGGCACAACCCCAGCTGTTCCTTCCAACCAGCAAGCCTCAACCGAGGATGCACTATCATCATCTCTAGGCAGATTGGTTGTAGGGGATAGAAATGATTCTGTGGAAGAGGCTCTCCTTAAAGAGCTTGAGGAGATGGGTTTTAAGCAGATTGATTTAAACAAAGAGGTTCTGAGAATGAATGAGTACAATCTGGAGCAGTCAATAGATGAACTCTGTGGTGTTTCTGAGTGGGATCCTCTCCTTCAAGAGTTGCACGATATGGGTTTCCATGACAGAGAGACTAACAAGAGGCTGCTGTTGAAGAATGAAGGAAGCATTAAGCGTGTTGTTATGGACTTGATCAATGGAGAATAG 2670 0.4401 MDSSLVIKAKYGDTLRRFNVRVDENNRLDLNMAGLRAKICSVFGFATDANFILRYVDEDGDLVNLVDDEDLHDVMRQQLKFLRIDVHMVNNSDGKSVADGSSGTSGSATPLRANPVSDPFLADALRALPEPMREALYSSFSKAANSNPVLANIADSISKIGQSILKPQGNSDTAGGSGSNKGVPGESVTPEAKGPQSPSVDSASAVSYVVPKAPQEALLRSKVLSARQGQEALSTASPAKQVQDALSSLSLSKAASARQLLRNLSNNRGPSFAPGPSSKNNLGEELVTSESRGPQFPFLGSVSGVNSQAAPYNVRQHVEAENMNGNVLGASGAGRQVESGNAGIAPVDLSSSTNVNRVPLSSAVPVSADKGKASFVDSVVSKDEKVPDNVNKGKASIDDSFTKNPAISFGAPIDCPFSGTHTPYPMPPPLGNFRFKRSHSHSDASNGMFHKGVRCDGCGVYPITGPRFKSKIKENYDLCSICFNEFGNQTDYIRMDRPASFRGPRCLYQNTREFRLPKIAPHIILKTGAKHGRPRLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTTAWPKGTQLVWIGGDKLSELDSVDLEVPDSGVSSEMELDIAVDFIAPQLPGRYISYWRMSSLSGHKFGQRVWVLIQVDASLKDSFYDSSQGLNLNIPLGVGSSEEPQIIDINVQPVEDDAFHQPKNPNAPPEPVSQMVDKELRQELGNEFPTNKATFVGPAASAPKISEASSSVSYPIIDFSGSAPTISAAPPTVSYPIIDLSGTTPAVPSNQQASTEDALSSSLGRLVVGDRNDSVEEALLKELEEMGFKQIDLNKEVLRMNEYNLEQSIDELCGVSEWDPLLQELHDMGFHDRETNKRLLLKNEGSIKRVVMDLINGE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02191 889 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Vivi1g02191 889 SUPERFAMILY RING/U-box 443 500 - -
Vivi1g02191 889 MobiDBLite consensus disorder prediction 164 184 - -
Vivi1g02191 889 MobiDBLite consensus disorder prediction 164 201 - -
Vivi1g02191 889 MobiDBLite consensus disorder prediction 265 293 - -
Vivi1g02191 889 Gene3D - 848 888 - -
Vivi1g02191 889 SMART PB1_new 4 89 IPR000270 GO:0005515
Vivi1g02191 889 CDD NBR1_like 534 647 IPR032350 -
Vivi1g02191 889 ProSiteProfiles Zinc finger ZZ-type profile. 450 500 IPR000433 GO:0008270
Vivi1g02191 889 FunFam next to BRCA1 gene 1 protein-like 532 651 - -
Vivi1g02191 889 SUPERFAMILY CAD & PB1 domains 3 81 - -
Vivi1g02191 889 Pfam Zinc finger, ZZ type 450 487 IPR000433 GO:0008270
Vivi1g02191 889 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 805 843 IPR015940 -
Vivi1g02191 889 Gene3D Immunoglobulins 532 650 IPR013783 -
Vivi1g02191 889 Gene3D - 801 847 - -
Vivi1g02191 889 Pfam Ig-like domain from next to BRCA1 gene 545 646 IPR032350 -
Vivi1g02191 889 CDD UBA_NBR1 848 886 - -
Vivi1g02191 889 Pfam PB1 domain 6 84 IPR000270 GO:0005515
Vivi1g02191 889 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 887 - -
Vivi1g02191 889 Gene3D - 442 497 IPR043145 -
Vivi1g02191 889 SMART zz_5 449 494 IPR000433 GO:0008270
Vivi1g02191 889 SUPERFAMILY UBA-like 849 887 IPR009060 GO:0005515
Vivi1g02191 889 Gene3D - 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02191 Vivi-Chr1 46053697 46058073 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02191 K17987 - gmx:100778692 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02191 1 46053697 46058073 Vivi1g02191 1 46053697 46058073 ECH