Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02106 ATGGAAACTTCTTCATCGGAAACCCCCACAGTTCGCGTCTTCAACATCCCACAATGCGCCACCGCCAAAGACCTCCTCAACTTCCTTGAATCCACCCTCGGCCCCTCCTCCGTCTTCGCCCTAGAAATCTTCACCGACCACTCCAACTGGAAATCCCGCGGTTCCGGCCGTATCCAGTTCGAAACCTTCCAAGCCAAATCACAAGCCCTATCTCTCTCCCAAGACAACAAACTCCTCTTCAACTCCCACTTCCTCCGCCTCTCTGCTTCCGGCGACGACATCGTTCCTAGACCTTCTCTTCCTAGTAACCGTCTCCATAACGGTGTTCTCCACGCCGGTTTCCCTAGCGGTCCTGATTGCATGAGTGTTCTTCAGTCATGGGAAGGCGTTCAGGGTTGGATCATGCCGGAAAGGAATAGGCTTGACTTCTGGGTTACTCATGATGATCAGTGTTTTAAGCTTGAGATTCCTTTTGAAAATATGTTGGAGTGTGATGGATATTGTTCTGATGATTCTAAACCTAATGCACTTCTCTTGAAGCTGAAATATGCACCAAGGATATATCAGAAAAAGGAGGGGCCAAATGTAGCTTCCAAGTTTAAGGCTAATAGGTATCGATTTTGTAAGGATAATTTTGAGTTTACGTGGGTGCGCACCACTGACTTCACAACTTTAAAATCAATTGGGCACTCTACCTCGTTTTTCTGGGAAATTGTGGAAGAATCGTTTGATTCTGAAGTTTTTCAAAGTTTCCCGCTTTACAGAGAGAATTTGAAGGATCTAAGTCTGGAAGATGGGGAAGAATTATGTTCTCCAACTGAAACGGTTCCACTTGTTAAGTGTCGTTCAGATTCTAAGTTGCCTTATGAGGCTCTTTTTCAATTGAACTCTCTTGTTCATACTCATAAAATTAGTCTTGCTTCAGTGGATGATGAGTTGATTGATTTGTTGGCAAGTTTGGATGAAGAAACTAAGGCTGTGATTTTTCAGAAATTGCACAAGCTGAATTCCACTTGTTATGAGCCTCTAAAATATGTGAAGACTCAATTACATGTGCTTAGTATAAAGAAAAAAAGTGTTCTCCCATTACAACAGAAAAGGTTGGCGGATAATAACATAATGAGATGTCATCGAGCCTTGATTACCCCGTCAAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAACCATGTGGTAAAACATTTTGCAACATATGCTTCAGACTTCATGAGGATTACATTTGTTGATGAGGATTGGAGTAAGCTTCCAACTAATGCAATATCAACTAGTTTGCAAAGGGGAATCTTCGCAAAGCCTTTTAAAACTGAAATATATAAGCGGGTATTGAATATTCTTCGAGATGGCGTTTTAATTGGATCAAAACGATTTGAGTTTCTCGCGTTCTCTGCTAGTCAACTGCGGTCAAACTCTGTTTGGTTATTTGCTTCTAATGACAAAGTGAAAGCAGCAGATATCAGAGAATGGATGGGAAGCTTCAAAAATATCCGTAGTGTTTCGAAATGTGCTGCACGAATGGGTCAGTTGTTCAGTTCTTCCAGGCAAACTTTTGAAATGGCCCCTCAAGATGTGGATTTAATTCCAGATATTGAAATCACCTCTGATGGTATAAACTACTGTTTCTCAGATGGTATTGGAAAGATTTCCCAAACTTTTGCACGGCAACTTGCTCAAAAGCTAAAATTGGACCAAAACCGGATTCCTTCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCTGTTGACCCCCATTCTTCTAGGAAGTTATCATTGCGTAATAGTATGCTGAAGTTCGAATCCAAAAACAGTATGCTTTGCATAACCAAATGCAGTGAGTCAATGCCGTGCTTTCTTAATCGAGAGATTATATCTCTGCTGTCCACATTAGGAGTAAAAGATGAGGCGCTTTTGGCATTGCAAGAGGGTCAGTTGCAGTTGCTAGGGAAGATGTTGACTGACAGGGAGGCGGCTTTGGATGTTCTAGAAAGTTTAAGTGGAGCTGATTCAAAAAGCATTCTAGTGAAGATGTTGCATGGATTTTATGAGCCAAACAGCGAGCCTTACCTATCAATGATGCTCAAGGCTCATTATGCATACCAGTTATCTGATTTGAAAAGCAGATGCCGGATATTTGTCCCCAAGGGCCGAGTCTTGATAGGCTGCTTGGATGAAACTGGTATTTTGAATTATGGCCAAGTATTTGTTCGCATAAGTGTGACAAAAACTAAGGAAAAATCTGGAGATGAAAATTTAAGGGACGTCGATGGTGATGGTAGCACATGTATTATAGTTGGTAAGGTGGTGGTCACCAAAAATCCTTGTCTTCACCCAGGAGATATCAGAGTCCTTGATGCTGTCTACAATGAAGAATTAGAAGAAAATGGATTGAAGGATTGCCTTGTATTTCCCCAAAAAGGACCTAGGCCTCATCCAAATGAATGCTCTGGAGGCGATCTTGATGGGGATTTATTTTTCGTAAGCTGGGACAAAGATCTGATTCCTGCTGAAACTGATAATCCAATGGACTACACAGGAAGAAGACCTCGTATAATGGACCACAAGGTGACACTAGAGGAAATACACCAATTTTTTGTTGATTACATGATCAACGATACTTTGGGTGCTATCTCCACCGCACATCTGGTTCATGCTGACCGTGAACCAGAAAAGGCCAGGAGTAGAAAATGTCTGGAGTTGGCTGAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGAGCTCCTGCAGAAATGCCTAGAGCTTTGAAACCAAGGGAATTTCCAGATTTCATGGAGAGGTTTGAAAAGCCTATGTATGTATCGAGAGGGGTACTAGGAAAACTATACCGCGCCTTAGTTGAATCAACATTGCAAGTAAGGTCTAACATTGTCTTGTCGGAGAAGCTTACTGAAGAAGCATATGATTGTCAACTTGAGGTTAATGGTTTTGAGTTCTTTCTCGAGACTGCCTCAAGCCACAGAGAAATGTATGCACAGAAGATGATCTCTTTAATGAGCTTCTATGGTGCAGAGACCGAGGATGAAATGCTAACGGGTAACTTGCTAAAACGTGCTTCATATTTGCAGCGCGATAACAGGAGATACGGAGATATGAAGGATCGAATTCTGATATCGGTAAAGGATCTTCAACGTGAAGCTAAAGGATGGTTTGAAAGTGATTGTCAGCCGGAAGAATATCAACTTATGGCTTCTGCATGGTATCATGTGACCTATCATCCCAAATATTACCATGAAAGCTCCACCTTTTTAAGCTTCCCATGGATTGTTGGTGACATTTTATTGCATATCAAGTCTGCAAATAGCTCACTATAG 3363 0.4184 METSSSETPTVRVFNIPQCATAKDLLNFLESTLGPSSVFALEIFTDHSNWKSRGSGRIQFETFQAKSQALSLSQDNKLLFNSHFLRLSASGDDIVPRPSLPSNRLHNGVLHAGFPSGPDCMSVLQSWEGVQGWIMPERNRLDFWVTHDDQCFKLEIPFENMLECDGYCSDDSKPNALLLKLKYAPRIYQKKEGPNVASKFKANRYRFCKDNFEFTWVRTTDFTTLKSIGHSTSFFWEIVEESFDSEVFQSFPLYRENLKDLSLEDGEELCSPTETVPLVKCRSDSKLPYEALFQLNSLVHTHKISLASVDDELIDLLASLDEETKAVIFQKLHKLNSTCYEPLKYVKTQLHVLSIKKKSVLPLQQKRLADNNIMRCHRALITPSKIYCLGPELETSNHVVKHFATYASDFMRITFVDEDWSKLPTNAISTSLQRGIFAKPFKTEIYKRVLNILRDGVLIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFKNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITSDGINYCFSDGIGKISQTFARQLAQKLKLDQNRIPSAFQIRYGGYKGVIAVDPHSSRKLSLRNSMLKFESKNSMLCITKCSESMPCFLNREIISLLSTLGVKDEALLALQEGQLQLLGKMLTDREAALDVLESLSGADSKSILVKMLHGFYEPNSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRVLIGCLDETGILNYGQVFVRISVTKTKEKSGDENLRDVDGDGSTCIIVGKVVVTKNPCLHPGDIRVLDAVYNEELEENGLKDCLVFPQKGPRPHPNECSGGDLDGDLFFVSWDKDLIPAETDNPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKPREFPDFMERFEKPMYVSRGVLGKLYRALVESTLQVRSNIVLSEKLTEEAYDCQLEVNGFEFFLETASSHREMYAQKMISLMSFYGAETEDEMLTGNLLKRASYLQRDNRRYGDMKDRILISVKDLQREAKGWFESDCQPEEYQLMASAWYHVTYHPKYYHESSTFLSFPWIVGDILLHIKSANSSL 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02106 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 1115 IPR007855 GO:0003968
Vivi1g02106 1120 SUPERFAMILY RNA-binding domain, RBD 5 94 IPR035979 GO:0003676
Vivi1g02106 1120 Pfam RNA dependent RNA polymerase 381 961 IPR007855 GO:0003968
Vivi1g02106 1120 CDD RRM_SF 11 88 - -
Vivi1g02106 1120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 92 IPR000504 GO:0003723
Vivi1g02106 1120 Gene3D - 1 78 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02106 Vivi-Chr1 44565959 44571148 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02106 K11699 - gmx:100808274 1764.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02106 1 44565959 44571148 Vivi1g02106 1 44565959 44571148 ECH