Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02089 ATGATTCCTCTTCGTTACTATTCCCTATGTCTCCTTCTCTTCCTCCTCTTACTCTCCACCTCCCTCTCACAATCCCATCGCTCTGCCAAGAAAAAACGCATGCGAGAAAAAGTTCGAAATATGTTTCACCATGCCTATGACAACTATATGACTCATGCGTTTCCGCATGATGAGTTAAAACCTCTCACTAAAACTTTCACTGACTCCCTAGTGGAGCTGGGGAATTTGAAGCTTGAACGTTTGCCTCAAGATTATAATGGCTCTGCGCTTTCGCTAATTGAATCATTGTCTAGTCTTGTGATTATGGGAAATAATACTGAATTCGAGAAGGGAGTGCGTTGGCTTTCGGAAAATCTAACATTTGACGTTGACGCTCGAATAAATCTTTTTGAGTGCAACATTAGGGTTCTTGGAGGACTTGTTTCTGCTCATTTACTGGCATCTGATTCTTCAAAAAACTTGCTTAAAGGATCTTACAAGAATCAGCTTCTAGGTCTGGCTGAAGATTTGGGGAAACGTTTTCTACCAGCGTTCAATACGCCAACTGGATTACCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCACTATTGACTGGTGACCCTAGATATGAATCTGTAGCTCTACGAGCTCTCCGTAAGCTATGGAGTATGCAGAGCTCATTAAAATTGTTTGGAACCACTCTTGATGTGTCAACTGGGAAATGGATCGAACATTCTGCAGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATACCTACTTAAAGCTCATATTCTTTTTGGAAAGGAGGACTATTGGAGAATGTTTCATTCTGCTTATGTTGCTGTACAGAAGCATTTCAGACACGGTCCCTGGTACCATGAAGCTGATATGAGGACCGGAAGAGCAACTTATTGGCAGCTTACAAGTCTTCAAGCATTTTGGCCAGGCCTACAGGTTCTTATTGGGGATATACATGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGCAATTTGGAGTGTTACCGGAGAGGTACTTACTGGACCATCAGATGCTTCATCCTACTGAAAAATATTATCCATTACGCCCCGAGTTTGCCGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGCGAATTAATAGTCAATTCCCTTAATTTATACGCCAGAGTAGAAGGTGGGTTTGCAAGCATCAAGGATGTGACAACTATGCAGTTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGTAAATATTTGTATCTTCTCTTCGATGATTCATTTATGCTCGAGAATAATTATGTGTTTACCACCGAAGGTCATCCCCTTCCAGTACTAAGCACTTGGCATGAAGAGCTTCCAGAAGCTTATGTTCCAACCAATTGGACCAACCTGAAGAGACCGAATCGAGCCAGTGCGATGTCTTTGCAAGTATGTCCTGCTATGACTTTAGATTCTGGTCAACATATAGAAAGTGCTTGCCACGTCCCCGATGTTCGCAGTGATTACAAGTGTTTGACAGATGAAGATTGTGGAGTTGATGCAGTAACATGCAGAAGAAGATCATGTAGCATGGCAGGTTATTGTGGACTATGGCTCTTCCTTTGA 1698 0.417 MIPLRYYSLCLLLFLLLLSTSLSQSHRSAKKKRMREKVRNMFHHAYDNYMTHAFPHDELKPLTKTFTDSLVELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKNLLKGSYKNQLLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSLLTGDPRYESVALRALRKLWSMQSSLKLFGTTLDVSTGKWIEHSAGIGAGVDSFYEYLLKAHILFGKEDYWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDIHAANSSHREFFHVWKQFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYIEVGELIVNSLNLYARVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFMLENNYVFTTEGHPLPVLSTWHEELPEAYVPTNWTNLKRPNRASAMSLQVCPAMTLDSGQHIESACHVPDVRSDYKCLTDEDCGVDAVTCRRRSCSMAGYCGLWLFL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02089 565 Pfam Glycosyl hydrolase family 47 41 474 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 Gene3D - 23 485 IPR012341 GO:0005975
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 440 460 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 324 340 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 176 195 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 267 284 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 41 61 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 126 144 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PRINTS Glycosyl hydrolase family 47 signature 381 405 IPR001382 GO:0004571|GO:0005509|GO:0016020
Vivi1g02089 565 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 9 482 IPR044674 GO:0004571|GO:1904380|GO:1904382
Vivi1g02089 565 SUPERFAMILY Seven-hairpin glycosidases 32 476 IPR036026 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02089 Vivi-Chr1 44268665 44272411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02089 3 562 Glycoside Hydrolase AT1G27520 75.795 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02089 K10084 - gmx:100793674 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02089 1 44268665 44272411 Vivi1g02089 1 44268665 44272411 ECH