Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02064 ATGACCCATTCACTTTCTCACTCTCTCCACCTACCAAACCCCTCCCCTTTCATCCCCACACTCCTCGACCCAAACACCACCTTCCGCCACCTCTCCTTTCCATCCACCGTAACCAAAACCCAACGGAAACTCAAATTCAAAGCCCACGCAAAGCACAAAGGACTCATCCTCGGAAAGCCATCGGTAACCGTAGAAAGCGGAAAATACACCTACGACATCGAAACCCTAATCAACCGATTCAGCAGCTTAGCTCCACGTGGCAGCATCGCTCGTATCCTCGACTCATTCAAGAACAAGCTTTCCCTCAATGATTTCGCTGTTGTGTTCAAGGAATTCGCCCAGCGCGGAGACTGGCAGCGTTCGCTTCGGTTGTTTAAATACATGCAGAGACAGATTTGGTGTAAACCGAATGAGCATATTTATACAATTATTATTACTCTTTTGGGTAGGGAGGGTTTGTTAGATAAGTGTCGCGAGGTGTTCGATGAAATGCCTAGCCAAGGTGTTCCGAGAAGTGTGTTTGCTTATACTGCTGTTATTAATGCTTATGGTCGTAACGGTCAGTTTCAGGATTCGCTTGAGTTGCTTGATAGAATGAAGCAAGAAAGGGTTTCTGCTAGTGTGTTGACTTATAATACTGTTATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAGGGTTTGTTAGGGTTGTTTGCTGAAATGAGACATGAAGGGATACAGCCTGATTTAGTAACTTATAATACATTGCTCGGTGCTTGTGCTCATAGGGGGTTGGGGGATGAAGCTGAAATGGTGTTTAGGACTATGAATGACGGTGGGGTTGTTCCGGATATTAATACTTATAGTTATCTTGTTCATACGTTTGGTAAGCTGGATAAACTTGAGAAGGTTTCGGAGCTTCTTAGGGAAATGGAGTCTGGTGGTAGTTTGCCGGATGTTAGCTCTTATAATGTTTTGTTGGAGGCTTATGCAGAGCCGGGGTCCATCAAAGAATCGATTGGGGTGTTTAGGCAGATGCAGGAGGCGGGGTGTGTGCCGAATGCGGCCACTTATAGTATTTTGTTGAGTTTGTATGGGAAGCATGGGAGGTATGATGATGTTCGTGATCTTTTTCTTGAAATGAAAGTGAGCAACACGGACCCTGATGCTGGTACTTATAATATCCTCATACAGGTCTTTGGGGAGGGTGGGTGCTTTAAGGAAGTTGTCACTTTGTTTCATGACATGGTGGATGAAAATATTGAGCCGAACATGGAGACTTACGAAGGTTTGATATTCGCTTGTGGTAAAGGAGGGCTTTATGAAGATGCTAAGAAAATTTTACTTCATATGAATGAAAAGGGAATAGTTCCGAGTTCCAAGGCTTATACTGGGGTGATTGAAGCATACGGGCAGGCAGCTTTGTATGAAGAAGCGCTGGTTGCATTTAACACAATGAATGAAGTTGGAAGCAACCCAACTATTGAGACCTACAATTCACTTGTTCGTTCATTTGCAAGGGGAGGACTGTACAAAGAGGTAGAAGCAATTTTATTCAGGATGAGGGAGTCTGGTTTACAGCCAGATGTGCATTCGTTCAATGGTGTGATAGAAGCTTTAAGGCAAGCAGGTAAATATGAAGAAGCTGTAAGAGCTCACGGTAAGATGAAAAACTGTGATCCTAATGAGTTGACACTTGAAGCAGTGTTATGGATATACTGCTCTGCTGGTCTTGTTGATGAGAGTCAGGAGCAGTTTCAAGAAATTAAAGCTTCAGGAATACTTCCCAGTGTTATGTGCTACTGCATGATGCTAGCTCTTTACGCAAAGAATGATAGGTCAAATGATGCCGATAATCTAATCAATGAGATGATCGCAACAGGAGTGTCGGATATTCATCAAGTGATTGGACAAATGATCAAGGGAGATTTTGATGACGAGTCTAATTGGCCGATTGTGGAGTACATCTTTGATAAACTCAATTCTAAAGGATCTGGAATTGGAATGATGTTCTACAATGCACTATTAGAAGCTCTTTGGTGGATGTGCCAAAGAGAAAGGGCTGCCAGAGTGCTCAATGAAGCATCAAAGCGAGGGCTTTTCCCTGAACTTTTTCGTAAAAATAAACTGGTGTGGTCTGTGGATGTACACAGGATGTCTGAAGGTGGTGCATTAACAGCATTGTCAATATGGTTGAACGATATGCAGGAGATGTTCATGACTGGCAAGGATCTTCCTGAACTTGCAGCCGTTGTTGTGGCTCGGGGTATAATGGAGGAAAGCGCAGATGCCCAAGATTTTCCCATCGCAAAGGCTGCATTTTCGTTCCTGCAGGATACTGTCTCATCCTCTTTTACTTACCCCGCATGGAACAAAGGTCGCATTGTTTGTCAGCAGTCACAACTGAGGCAAATTCTATCGGGCACCGGATCATCTTCAAGTATAGAAGAAGTGGATAAATTAGTATCTTTAAGTAATAGCTCATTGACTACTGCAGGAGCTATAACATCCAAATCTGATGTTCAAAGTGGTAGAGCTAATGGTGTTGATTCCAGAACCAATAGAACTAGAACAGAGCTTCTAATTAGTGCAGTTTAG 2580 0.4341 MTHSLSHSLHLPNPSPFIPTLLDPNTTFRHLSFPSTVTKTQRKLKFKAHAKHKGLILGKPSVTVESGKYTYDIETLINRFSSLAPRGSIARILDSFKNKLSLNDFAVVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIITLLGREGLLDKCREVFDEMPSQGVPRSVFAYTAVINAYGRNGQFQDSLELLDRMKQERVSASVLTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDLVTYNTLLGACAHRGLGDEAEMVFRTMNDGGVVPDINTYSYLVHTFGKLDKLEKVSELLREMESGGSLPDVSSYNVLLEAYAEPGSIKESIGVFRQMQEAGCVPNAATYSILLSLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGCFKEVVTLFHDMVDENIEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSNPTIETYNSLVRSFARGGLYKEVEAILFRMRESGLQPDVHSFNGVIEALRQAGKYEEAVRAHGKMKNCDPNELTLEAVLWIYCSAGLVDESQEQFQEIKASGILPSVMCYCMMLALYAKNDRSNDADNLINEMIATGVSDIHQVIGQMIKGDFDDESNWPIVEYIFDKLNSKGSGIGMMFYNALLEALWWMCQRERAARVLNEASKRGLFPELFRKNKLVWSVDVHRMSEGGALTALSIWLNDMQEMFMTGKDLPELAAVVVARGIMEESADAQDFPIAKAAFSFLQDTVSSSFTYPAWNKGRIVCQQSQLRQILSGTGSSSSIEEVDKLVSLSNSSLTTAGAITSKSDVQSGRANGVDSRTNRTRTELLISAV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 553 IPR002885 -
Vivi1g02064 859 Pfam Pentacotripeptide-repeat region of PRORP 185 329 IPR033443 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 242 IPR002885 -
Vivi1g02064 859 PANTHER OS03G0856100 PROTEIN 328 809 - -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Vivi1g02064 859 Gene3D Tetratricopeptide repeat domain 224 329 IPR011990 GO:0005515
Vivi1g02064 859 Gene3D Tetratricopeptide repeat domain 330 449 IPR011990 GO:0005515
Vivi1g02064 859 Gene3D Tetratricopeptide repeat domain 550 732 IPR011990 GO:0005515
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vivi1g02064 859 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 223 325 - -
Vivi1g02064 859 Pfam PPR repeat family 382 429 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 491 524 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 386 418 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 140 171 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 421 453 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 175 206 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 210 243 IPR002885 -
Vivi1g02064 859 NCBIfam pentatricopeptide repeat 351 384 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 563 588 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 140 169 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 491 520 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 594 622 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 526 553 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 456 484 IPR002885 -
Vivi1g02064 859 Pfam PPR repeat 351 378 IPR002885 -
Vivi1g02064 859 Gene3D Tetratricopeptide repeat domain 450 549 IPR011990 GO:0005515
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Vivi1g02064 859 Gene3D Tetratricopeptide repeat domain 78 223 IPR011990 GO:0005515
Vivi1g02064 859 SMART SMR_2 705 794 IPR002625 -
Vivi1g02064 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02064 Vivi-Chr1 43657747 43664026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02064 264 717 Glycosyltransferase AT1G05670 23.362 2.97e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02064 - - gmx:100797731 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02064 1 43657747 43664026 Vivi1g02064 1 43657747 43664026 ECH