Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02053 ATGAAGAGAGCGAGAACGGGAAAGGTCGATTCTTTCTTCTTCTCGCTCTGTCGACAACGATCCTTCCAAATTCTCATCGTCCTCGCTCTTTTCTACGTTCTTCTATTCACTCTCGAAATCCCCTTCGTTTTCAAAAACACCGCCACGCGCTCCGAGAGGTACGCGCTTGAACGACAGCAACAGCTTCAACCGAGTCAGTCTCAGGCACACGAAATCACTCGCCGCCATAATCGCCGTTCGATTCTGTCCGGATTGGTACTAAACGACGCCGCATTTGATTCCGAGGTTTATCATTCAGCGTACCGAGATGGGAAAAGGGTTTGGGAGGAAGTTGAATCGGCGAAAACGCCGATTCAAACCGGTCCCGTTTTAAAGCCGGAGAATAGGTCTAATTTATGTCCGCGATCGGTTTATGTGTCCGGGGTTGATTTTGTGGGGAATGGGAGTTTGATGATGATTCCGTGTGGGTTGACGTTAGGGTCGCATGTAACGGTGGTTGGGATGCCGTTGGGAACACCGGAGGGGAAGAAATCGCAGTTTATTGTGGAGTTGCTGGGTTTGAAAACGAGTGAAGGGGAGGACCCGCCTAGGATATTGCATTTCAATCCTAGGTTGAAAGGGGATTGGAGTTGGAAGCCGGTTATTGAGCTTAATACTTGTTATAGGATGCAGTGGGGTACTTCTTTGAGATGTGATGGCTGGAAATCTAGGGCTGATCAAGATACTGTTGACGGGCTGGTGAAATGTGAGAAGTGGATTGGGGGAGAATCCGGAGATGATAGACACGCAGTGGAGTCTAAATCAGAATGGTGGTTGAAGAGACTCATAGGTCGAACAAAAAGAGTAACAGTTGATTGGCCATTTCCATTTAATGAAAACAAGCTATTTGTTCTCACTCTTAGTGCTGGATTGGAGGGCTACCATATTAATGTTGATGGGAGGCATGTGGCCTCCTTTCCTTATCGCACTGGCTTTACTCTCGAGGATGCTACTGGACTCACTGTAACCGGAGATATTGATGTCCATTCTATATTTGCTGCCTCCTTGCCTTCAATGCATCCTCGTATTTCTCCACAGCAGTATCTTGAATTTTCAACGAGATGGCGTGCCCCACCACTACCTGAGTTTGGAGTGGAATTGTTCATTGGCATCCTATCAGCTGGAAACCATTTCGCTGAGCGGATGGCTGTGAGGAAGTCGTGGATGCAGCATAGCCTTATCAAATCTTCAGAAGTGGTGGCTCGTTTCTTTGTAGCACTGCACCAGAGAATAGAAATTAATGCAGAGTTGAAAAAGGAAGCAGAATTTTTTGGAGATATTGTTATTGTGCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCTATATGTGAATATGGGGTTCATACAGCGGCTGCAGCGTACATCATGAAAGGTGACGATGACACGTTTGTGAGGGTGGATGCTGTTCTAAATGAAGCAAGGAATGTTCCAGATTTTATGAGCGCTTATATTGGGAATATAAATTATCATCACAAACCCTTGCGCCATGGTAAATGGGCTGTGACATATGAGGAGTGGCCAGAAGAAGATTACCCGCCATATGCTAATGGCCCGGGTTATATTCTGTCTTATGATATTGCACAATACATTGTTTCTGAATTTGAGAAGCATAAATTAAGGTTGTTTAAAATGGAAGATGTGAGCATGGGAATGTGGGTAGAGAAATTTAACAGCACAAAACAAGTGTACTATTCGCATAGCTTAAAGTTCTGCCAGTTTGGGTGTATTGAAGGCTATTACACAGCCCATTACCAATCTCCAAGACAGATGACGTGCCTATGGGAAAAATTGCAGCGGCAAACAAGTCCTCAATGTTGCAACATGAGATAA 1881 0.4508 MKRARTGKVDSFFFSLCRQRSFQILIVLALFYVLLFTLEIPFVFKNTATRSERYALERQQQLQPSQSQAHEITRRHNRRSILSGLVLNDAAFDSEVYHSAYRDGKRVWEEVESAKTPIQTGPVLKPENRSNLCPRSVYVSGVDFVGNGSLMMIPCGLTLGSHVTVVGMPLGTPEGKKSQFIVELLGLKTSEGEDPPRILHFNPRLKGDWSWKPVIELNTCYRMQWGTSLRCDGWKSRADQDTVDGLVKCEKWIGGESGDDRHAVESKSEWWLKRLIGRTKRVTVDWPFPFNENKLFVLTLSAGLEGYHINVDGRHVASFPYRTGFTLEDATGLTVTGDIDVHSIFAASLPSMHPRISPQQYLEFSTRWRAPPLPEFGVELFIGILSAGNHFAERMAVRKSWMQHSLIKSSEVVARFFVALHQRIEINAELKKEAEFFGDIVIVPYMDNYDLVVLKTVAICEYGVHTAAAAYIMKGDDDTFVRVDAVLNEARNVPDFMSAYIGNINYHHKPLRHGKWAVTYEEWPEEDYPPYANGPGYILSYDIAQYIVSEFEKHKLRLFKMEDVSMGMWVEKFNSTKQVYYSHSLKFCQFGCIEGYYTAHYQSPRQMTCLWEKLQRQTSPQCCNMR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02053 626 Gene3D - 149 345 - -
Vivi1g02053 626 Gene3D - 377 623 - -
Vivi1g02053 626 Pfam Galactosyltransferase 393 573 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vivi1g02053 626 SUPERFAMILY Concanavalin A-like lectins/glucanases 151 345 IPR013320 -
Vivi1g02053 626 SMART Gal_bind_lectin_2 153 346 IPR001079 GO:0030246
Vivi1g02053 626 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 359 576 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vivi1g02053 626 CDD GLECT 153 345 IPR001079 GO:0030246
Vivi1g02053 626 FunFam Hydroxyproline O-galactosyltransferase 371 614 - -
Vivi1g02053 626 Pfam Galactoside-binding lectin 150 345 IPR001079 GO:0030246
Vivi1g02053 626 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 149 347 IPR001079 GO:0030246
Vivi1g02053 626 FunFam Hydroxyproline O-galactosyltransferase GALT2 261 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02053 Vivi-Chr1 43158882 43162559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02053 1 626 Glycosyltransferase AT1G74800 59.882 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02053 K20843 - gmx:100800292 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02053 1 43158882 43162559 Vivi1g02053 1 43158882 43162559 ECH