Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02052 ATGTTGTCTCTCAAAATGACAGAGATGTGGACAACAATTGGGTCAACCTTAGCAAGCTTCATGTTCATTTGGGCTATCATAAGACAATACTGTCCATACCAGCTTCTCCGTTTCTTTGAAAAATACAGTCACAGAATCATGGACTACTTCTACCCTTACATAAGAATCTCATTCCATGAATTCTTAGGTGACAGGCTCAAAAGAAGTGATGCTTATGGAGCTGTTGAAGCTTATCTCAGTGCCAACACATCAAAGAGTGCAAAGAGACTCAAAGCTGAGATAGGTAAAGACAGCACCAACTTGGTCTTAACAATGGATGAATATGAAAGAGTAACAGATGATTACAACGGAGTAAAAGTCTATTGGGTTTGTAGCAAAGTCATGGCAGCTTCAAGATCCATGCCTTATTATCAAGAACAAGAGAAGAGATTCTACAAACTCACTTTTCATAAGAAGTATAGGGATACTATAACAGGTTCTTATTTGGATCATGTGATGAAAGAAGGGAAAGAGATTCGGTTGAGGAATAGGCAGAGAAAGTTGTACACAAATAGTCCTGGTTATAAATGGCCTAGCTACAAGCAAACTATGTGGAGTCACATTGTTTTTGAACACCCTGCAACATTTGAAACAATGGCTATGGAGCCAGAGAAGAAGAAAGAGATCATTGAAGATTTGGTTACTTTTAGCAAAAGCAAAGATTTTTATGCTAGGATTGGGAAAGCTTGGAAAAGGGGTTATCTACTTTTTGGTCCTCCAGGTACTGGCAAATCAACAATGATTGCTGCTATGGCGAATTTGTTGGGCTATGATGTTTATGATTTGGAGTTAACAGCAGTGAAAGACAACACTGAGTTAAGGAAGCTTTTGATAGAGACAACAAGTAAGTCAATTATTGTTATAGAAGACATAGATTGTTCACTTGATCTAACAGGCCAGAGAAAGAAAAAGGGTGAAAGTAAGTTTTTTTCTGATGATGAGACTGATAACAAGGCGGGTTTCGATGCGGCGAGGAAGGAGGTGAAGGAGGAAGGAAGTGGAGGTGGGAATAGCAAGGTTACACTTTCAGGGCTATTGAATTTCATTGATGGGATATGGTCAGCATGTGGAGGTGAGAGGTTGATAGTTTTCACTACAAATTATGTGGAGAAGCTTGACCCTGCACTTATAAGGAGGGGTAGAATGGACAAGCATATAGAGCTTTCTTATTGTAGTTTCAATGGTTTTAAAGTGCTTGCTAATAATTACTTGAGAGTTGAGAAACATGCATTGTTTGAGAGGGTTGAGAGGTTGATTGGTGAAGTGAAGATTACTCCTGCTGATGTTGCTGAGAATCTTATGCCTAAGTCTCCTATGGATGATGCTGATAAGTGTCTTTTGAATTTGATTGAGGCTCTTGAGGAAGTTAGAGGGAGGAGTGGTTTGGTTAAGGAGCATGATGAGGAAGTGGAATGTGTTAGTAGTGTTGTTAAGGAAAATGGTGAGATTGTTGATGATGATGATGATGATGATGATGATGAGAAAGAGATTGATGAAGGAAAGAAGCAAATTGAGAGGTAG 1560 0.3904 MLSLKMTEMWTTIGSTLASFMFIWAIIRQYCPYQLLRFFEKYSHRIMDYFYPYIRISFHEFLGDRLKRSDAYGAVEAYLSANTSKSAKRLKAEIGKDSTNLVLTMDEYERVTDDYNGVKVYWVCSKVMAASRSMPYYQEQEKRFYKLTFHKKYRDTITGSYLDHVMKEGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLFGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGESKFFSDDETDNKAGFDAARKEVKEEGSGGGNSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCSFNGFKVLANNYLRVEKHALFERVERLIGEVKITPADVAENLMPKSPMDDADKCLLNLIEALEEVRGRSGLVKEHDEEVECVSSVVKENGEIVDDDDDDDDDEKEIDEGKKQIER 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02052 519 PANTHER BCS1 AAA-TYPE ATPASE 12 472 - -
Vivi1g02052 519 FunFam AAA-ATPase ASD, mitochondrial 199 399 - -
Vivi1g02052 519 SMART AAA_5 243 405 IPR003593 GO:0016887
Vivi1g02052 519 MobiDBLite consensus disorder prediction 495 509 - -
Vivi1g02052 519 Pfam Domain associated at C-terminal with AAA 32 124 IPR025753 -
Vivi1g02052 519 ProSitePatterns AAA-protein family signature. 373 392 IPR003960 GO:0005524|GO:0016887
Vivi1g02052 519 CDD RecA-like_BCS1 222 401 - -
Vivi1g02052 519 Gene3D - 399 465 - -
Vivi1g02052 519 Gene3D - 203 398 IPR027417 -
Vivi1g02052 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 452 IPR027417 -
Vivi1g02052 519 MobiDBLite consensus disorder prediction 490 519 - -
Vivi1g02052 519 Pfam ATPase family associated with various cellular activities (AAA) 248 402 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02052 Vivi-Chr1 43126310 43128430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02052 208 401 Miscellaneous Gene Families AT5G58870 28.713 1.65e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02052 - - gmx:100798981 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02052 1 43126310 43128430 Vivi1g02052 1 43126310 43128430 ECH