LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02003	ATGTCGACTCCGGCTAGGAAGAGACTGATGAGAGATTTCAAGAGGCTGCAACAGGATCCACCTGCTGGAATCAGTGGTGCTCCTCACGATAACAACATCATGCTGTGGAATGCTGTTATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTTCAATTTTCCGAGGATTATCCGAACAAGCCACCCACTGTACGGTTTGTCTCCCGAATGTTTCACCCAAACATTTATGCTGATGGAAGTATTTGTCTGGATATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCAATTCTCACTTCTATCCAGTCATTACTTTGTGATCCCAATCCAAATTCTCCTGCAAACTCTGAAGCAGCACGGATGTACAGTGAGAACAAGCGCGAGTACAATAAAAGAGTCCGGGAGACTGTGGAGCAGAGTTGGACAGCCGACTAA	459	0.451	MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNKRVRETVEQSWTAD	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02003	152	Gene3D	Ubiquitin Conjugating Enzyme	1	148	IPR016135	-
	Vivi1g02003	152	PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	3	149	-	-
	Vivi1g02003	152	SMART	ubc_7	7	150	-	-
	Vivi1g02003	152	ProSitePatterns	Ubiquitin-conjugating (UBC) active site signature.	77	92	IPR023313	-
	Vivi1g02003	152	FunFam	Ubiquitin-conjugating enzyme E2 2	1	148	-	-
	Vivi1g02003	152	CDD	UBCc	7	145	IPR000608	-
	Vivi1g02003	152	ProSiteProfiles	Ubiquitin-conjugating (UBC) core domain profile.	4	150	IPR000608	-
	Vivi1g02003	152	SUPERFAMILY	UBC-like	1	150	IPR016135	-
	Vivi1g02003	152	Pfam	Ubiquitin-conjugating enzyme	8	144	IPR000608	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02003	Vivi-Chr1	42364327	42368249	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g02003	7	120	Miscellaneous Gene Families	AT1G17280	31.092	6.58e-16	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02003	K10573		-	rvl:131311395	316.235

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g02003	1	42364327	42368249	Vivi1g02003	1	42364327	42368249	ECH