Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01927 ATGGCAGCGGCAGCATCAGCAGCTACTTTTTCTATTGGAACCGCCCAAACAGGGAGGTCACTTCCTCAATCAAACCCTTTTGGTTTGAAACTCAATTCCCATGTTAATTTCAGAAGCTTCTCTGGCCTCAAGGCTATGCCATCATCTCTCAGATGTGAGTCTGAATCATCTTTCTTCGGCAATGAAACTTGTGCTGCGCTTCGTGCAACTTTTGCTCCCAAAGCTGTACAAGAAAACCGAAGCCTCAACCACAACTTGCAGCCACAGGCATCCTACAAAGTAGCGGTTCTTGGTGCTGCGGGAGGGATTGGTCAGCCGCTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCTGACCTGCATCTCTATGATATTGCAAATGTTAAGGGTGTTGCGGCTGATATTAGTCACTGCAACACTCCTTCAAAAGTTGTGGATTTCACTGGAGCTGCTGAGTTAGCGAACTGTTTGAAAGGTGTGGATGTTGTTGTTATACCTGCTGGTGTTCCTAGGAAACCCGGCATGACTCGTGATGATCTTTTCAATATCAATGCTGGTATAGTCAGAGACTTGGTCTCCGCTGTTGCAGATAATGCTCCTGGGGCTTTTATTCATATTATCAGTAATCCGGTGAATTCTACTGTGCCTATTGCTGCTGAAATTCTGAAACAAAAAGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTAGCACACTTGATGTTGTGAGGGCAAACACTTTTGTGGCTCAGAAGAAGAACCTGAGGCTGATTGATGTAGATGTTCCTGTTGTTGGAGGCCATGCTGGGATTACCATTCTTCCTCTATTGTCAAAGACAAAACCCTCGGCGAGTTTCACTGATGAGGAAATTGAGGAGCTGACTGTCAGGATTCAAAATGCTGGAACTGAAGTTGTTGAGGCAAAAGCTGGTGCAGGGTCTGCAACTTTGTCAATGGCTTATGCGGCAGCTAGATTTGTTGAATCGTCCCTTCGTGCGCTTGACGGAGATGCTGATGTGTATGAATGCTCATATGTACAGTCAGATTTGACTGACCTTCCCTTTTTTGCTTCAAGGGTGAAGATTGGCAGGAAAGGAGTTGAAGCTTTAATTCCAACTGATCTCCAAGGATTGAGTGAGTATGAGCAGAAGGCTTTGGAAGCACTCAAGCCAGAACTTAAGGCCAGTATCGAGAAGGGGGTTGCTTTTGCTCAAAAGCAAACTGTCGCTGCTTAA 1233 0.455 MAAAASAATFSIGTAQTGRSLPQSNPFGLKLNSHVNFRSFSGLKAMPSSLRCESESSFFGNETCAALRATFAPKAVQENRSLNHNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVVDFTGAAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNAPGAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSASFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGVAFAQKQTVAA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01927 410 SUPERFAMILY LDH C-terminal domain-like 237 403 IPR015955 GO:0003824|GO:0016616
Vivi1g01927 410 Gene3D - 237 408 IPR015955 GO:0003824|GO:0016616
Vivi1g01927 410 FunFam Malate dehydrogenase 237 405 - -
Vivi1g01927 410 NCBIfam malate dehydrogenase 93 404 IPR010097 GO:0006099|GO:0030060
Vivi1g01927 410 Gene3D - 90 236 - -
Vivi1g01927 410 Pfam lactate/malate dehydrogenase, NAD binding domain 93 235 IPR001236 GO:0016491
Vivi1g01927 410 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 236 IPR036291 -
Vivi1g01927 410 CDD MDH_glyoxysomal_mitochondrial 92 403 IPR010097 GO:0006099|GO:0030060
Vivi1g01927 410 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 238 402 IPR022383 GO:0016616
Vivi1g01927 410 PANTHER MALATE AND LACTATE DEHYDROGENASE 80 406 - -
Vivi1g01927 410 FunFam Malate dehydrogenase 90 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01927 Vivi-Chr1 41118536 41120619 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01927 K00026 - gmx:100783173 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01927 1 41118536 41120619 Vivi1g01927 1 41118536 41120619 ECH