Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01910 ATGGGTCCACCTCCTCTGAGTGATGATCTATCGGAAATCGTATTCTTCGACGTAGAAACCACCGTGCCGACCCGACCCGGTCAGGGTTTTGCCATTTTAGAATTCGGAGCGATTCTGGTATGTCCGAGGAAACTGACGGAGCTTCGAAACTACTCCACTCTGGTCAGACCTGCTGATCTTTCACTCATCACTCCTTTATCGGAGCGATGTAACGGAATCAACGCTGAAGCTGTTTCGTCTGCTCCTACATTCGCCGACATCGCTAGTGCTGTTTATGATCTTCTTCACGGGAGGATTTGGGCGGGGCATAATATCATAAGATTTGATTGTGTTAGGGTTAAAGATGCATTTGCTGCGATTAATCAAACACCGCCTGAACCTAAAGGATATATTGATTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCAACCTATTTTGGTCTTGGGCAGCAGACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTTCTCAAATATTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGAAAATAGTTGGGTTTCGCCAAATGCTGTTACAAGAAGTCGCAGTAATGGGAAATCTCGGTCAGAAGGGGGTTTGTTAAATATGAATAAGGATTCTGTGTTGGTATCATCTCCTGAAACTGCAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAAATGTGGATGTCCCAAATGTTGCAGATTCTTTTAGTTTTCGTGAACTTCAGGATGAAATTAATAGGGAGTCCGTTAGAGCAGATGTTGCCATGAATGAGAAATCCATACAAAATTCACCTGATTCTGCAGCCTCATTTTCTGTGCTTCAGACTAGCAGCAGCTCTATCGTTGTTTTGGAGCCCGAAAAAATATCTATTTCTTCTCTTGATGCATCTCTTGTTCCATCTTATCGTGGCAGTCAAAGGATAGAATTACTTCATGAAGGTTTCGCATTTCAGCTTCATTCTTCTGGTTTGAAAGTGCGGTTTGGAATTAGCACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGTTAAATTTTGTGGTTGATCCATCACCAAGTTTATGCAATGTTCTTGAAGCATGCGACAATGTTGCACGTAAGTTATCCGCAGAGTCTGGTAGTGGCTCTGATTGGAGGCCAGTTGTTATCAGGAAAGAGGGCTTCTACAACTATCCTACCATCAGATTGCACTTACCTACAGCAGTATGCGAAGAGATTGCCATTTATGCAACAGAAATATATCAAAAAGAAACATCTGGATCTGTGCAAAGACTTCTCTTCAGCAAGTTTGACGCAGAAGAGCTTGGTGCCATGTTCAAGCCTGGGACATTTGTTGATGCGGTCTTCTCCTTAGATCCTTATGACTATCATCAGAATGCAGGGATTAAATTAGTTGCCAAGAAATTGATCATTCATTGA 1491 0.4239 MGPPPLSDDLSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLITPLSERCNGINAEAVSSAPTFADIASAVYDLLHGRIWAGHNIIRFDCVRVKDAFAAINQTPPEPKGYIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENSWVSPNAVTRSRSNGKSRSEGGLLNMNKDSVLVSSPETADKNHPILSLATSSTNVDVPNVADSFSFRELQDEINRESVRADVAMNEKSIQNSPDSAASFSVLQTSSSSIVVLEPEKISISSLDASLVPSYRGSQRIELLHEGFAFQLHSSGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLEACDNVARKLSAESGSGSDWRPVVIRKEGFYNYPTIRLHLPTAVCEEIAIYATEIYQKETSGSVQRLLFSKFDAEELGAMFKPGTFVDAVFSLDPYDYHQNAGIKLVAKKLIIH 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01910 496 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 12 487 - -
Vivi1g01910 496 Gene3D - 6 184 IPR036397 GO:0003676
Vivi1g01910 496 SUPERFAMILY Ribonuclease H-like 11 182 IPR012337 -
Vivi1g01910 496 Pfam Exonuclease 14 177 IPR013520 -
Vivi1g01910 496 Coils Coil 263 283 - -
Vivi1g01910 496 CDD DEDDh 14 178 - -
Vivi1g01910 496 SMART exoiiiendus 12 186 IPR013520 -
Vivi1g01910 496 FunFam Exonuclease family protein 6 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01910 Vivi-Chr1 40537585 40541075 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01910 - - ccaj:109808157 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01910 1 40537585 40541075 Vivi1g01910 1 40537585 40541075 ECH