Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01874 ATGTTCAATTCAAAGAAATCTCCTTTGAGAGCTGGGAAACCCAACACTGTTAGTCCTGTTAATGATGTTAAACCCTGGTCAAACCCGTTTGATTCTGACGATGATGATGAAAAGGATAACAAAAAGTATAGTTCTTCCTCAAAGAAGACTTCTTCAGAACGGGCACTAATTACACCAGAAGTTAACACCAACCCGTTTGATGATATTGATGACAAGAAGAAACCTTCGTCGTTTACGTATGCCCATCAATCAGCAGACCGGAATAGGTTTAAGAATAATGTTCATGATTCTGGTGATAATGATGAAAAGGATAACAAAAAGTATAGTTCCTCAAAGAAGAATTCTTCAGAACGAGCACTAGTTACGCTGGAAGTTAACACCAACCCATTTGACGACATTGTTGACAATAAGAAATCTTCATCGTTTACTAATGCCCATCAATCAGTAGACAGGAATAGGTTTAAGAATAATTTCCGTGATTCTGGTGGATTAGAGAACCAGTCTGTACAGGAGTTGGAGAGTTATGCTGTTTATAAGGCTGAGGAGACTACAAAATCGGTCCATAATTGTTTGAAGATAGCAGAGAACATTAGAGAGGATGCTACCAAGACTTTAGTCACCCTTCATCATCAGGGTGAGCAAATTACCAGGAGTCACCAAGTCGCTGCTGATATTGATCGAGATTTAAGTCGGGGAGAAAAGCTTTTGGGAAGTCTTGGTGGGCTCTTCTCCAAAACTTGGAAAGCAAAGAAGACACGAACAATAACAGGCCCTGTTATTTTTGGAGATGATCCAGTTAGAAGAAAGGTAAACCACTTGGAACAGAGAGAGAACTTGGGATTGACTTCTGCATCCAAAGGGCAGTCTAAGCTGCGGACTCCTCCTCAGGAACCAACAGCTGCACTTGAAAAAGTCGAGTTTGAAAAAGGGAAGCAAGATGATGCACTGTCGAATTTAAGTGATCTTTTGGGAGAGCTTAAAGATATAGCCGTTGACATGGGATCTGAAATTGAGAGACATAACAAAGCCTTGAGTCATCTAGATGATGATGTGGATGAGTTGAATTTCCGAGTGAAAGGAGCTAATCAACGCGGTCGTCGTTTACTTGGAAAATAA 1116 0.405 MFNSKKSPLRAGKPNTVSPVNDVKPWSNPFDSDDDDEKDNKKYSSSSKKTSSERALITPEVNTNPFDDIDDKKKPSSFTYAHQSADRNRFKNNVHDSGDNDEKDNKKYSSSKKNSSERALVTLEVNTNPFDDIVDNKKSSSFTNAHQSVDRNRFKNNFRDSGGLENQSVQELESYAVYKAEETTKSVHNCLKIAENIREDATKTLVTLHHQGEQITRSHQVAADIDRDLSRGEKLLGSLGGLFSKTWKAKKTRTITGPVIFGDDPVRRKVNHLEQRENLGLTSASKGQSKLRTPPQEPTAALEKVEFEKGKQDDALSNLSDLLGELKDIAVDMGSEIERHNKALSHLDDDVDELNFRVKGANQRGRRLLGK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01874 371 Gene3D - 163 240 - -
Vivi1g01874 371 SMART tSNARE_6 172 239 IPR000727 -
Vivi1g01874 371 SMART tSNARE_6 301 368 IPR000727 -
Vivi1g01874 371 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 311 368 IPR000727 -
Vivi1g01874 371 MobiDBLite consensus disorder prediction 1 118 - -
Vivi1g01874 371 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 45 371 - -
Vivi1g01874 371 MobiDBLite consensus disorder prediction 88 113 - -
Vivi1g01874 371 MobiDBLite consensus disorder prediction 28 48 - -
Vivi1g01874 371 FunFam SNAP25 homologous protein SNAP33 163 240 - -
Vivi1g01874 371 CDD SNARE_SNAP25N_23N_29N_SEC9N 175 238 IPR044766 GO:0005484|GO:0031201
Vivi1g01874 371 MobiDBLite consensus disorder prediction 276 295 - -
Vivi1g01874 371 FunFam SNAP25 homologous protein SNAP33 303 370 - -
Vivi1g01874 371 SUPERFAMILY SNARE fusion complex 167 237 - -
Vivi1g01874 371 Gene3D - 304 370 - -
Vivi1g01874 371 CDD SNARE_Qc 311 367 - -
Vivi1g01874 371 MobiDBLite consensus disorder prediction 276 298 - -
Vivi1g01874 371 SUPERFAMILY SNARE fusion complex 310 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01874 Vivi-Chr1 39873082 39876275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01874 K18211 - gmx:100809874 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01874 1 39873082 39876275 Vivi1g01874 1 39873082 39876275 ECH