Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01838 ATGGCAGAAACCCGAAGACCTTCATCTTCATCAACCGTTCTCGACACTCTAGGCGAAGAAATCGTTAGAATCATCACCCCCGTTTCAATCTGCATGTTCCTCGTTGTAATCCTAGTCTCAATTCTCAACACAAACGATTCCCCAACAATCTCCACCATAGCCAACATAGCATACGACGAAACAACCTCAGATTCTTCCTGGGACAAATTCCTCGGCGCACTTCTAAACTCCTTGTCCTTCGTCGTCGTTGTAACCTTCACCACTTTCTTCTTAGTCCTCCTCTTCTATTTCCGATGTATCAGGTTCTTAAAACTCTACATGGCTTTCTCTTCATTCGTCGTTTTAGGTTTCCTCGGAGGCGAAATTTCTGTGTTTTTGATTCAACATTTTAGTACTCCAATCGACTGTATAACGTTTTCAATTGTTTTGGTTAATTTCGCTGTTGTTGGTGTTTGTGCTGTGTTTATGTCGAAAATGGCTATTTTTGTTACACAAGGTTATTTGGTTGTTATTGGAATATTGGTTGCTTATTGGTTTACTATGTTGCCTGAATGGACAACCTGGGCCATGCTTGTTGCTATGGCTTTGTATGATCTTGCTGCTGTTTTGTTGCCTGTTGGGCCTTTAAGGCTTCTGGTTGAACTTGCCATTTCAAGAGATGAAGAGATTCCGGCTTTGGTTTACGAGGCTAGGCCGGTGAGGAATGATAGTTTGGATCCGAGTGATGTTGCGGCTCGGAGGAGGTTATGGAGAGAGAGGAGGATTGAGAATTCTAATCTGATAACTGAGAATGAAAATTCTGTGTTGGGTGGTAGTGAACTCAATGCTGAACAATCACACTCAAATCAAGACGCGAATGCTGTTGTTAGTTCAAGTTCAAACAGAAATGCTTCGAATTTGAATTCTAGTATCTCTTATGGACCGTGTAATTTGGTAAGAGCAGAAGAGGGGCGAGTGCAGGTTCGAGAAACTGATTCAGATCTTGCCACACCCTTGATTAGTCATGGAATGAACACACAGGTTCCTGGGAGAGAAGATGCTGCGTCGAATGAGAATTTGATGCTGGAGGGAATTGGATTGGCTTCGTCCGGTGCAATCAAATTGGGGCTTGGCGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCTGCAATGTATGATTTTATGACAGTGTATGCGTGTTATCTTGCAATTATTGCTGGTCTAGGCGTAACTTTGATGCTTTTGGCTTTTTATCAAAAAGCCTTGCCTGCTCTACCTGTGTCAATAGCCCTGGGTGTGTTGTTTTATTTCTTGACTAGATTATTACTTGAAGTATTTGTAGTACAATGTTCATTGAATCTCTTAATGTTCTGA 1356 0.4189 MAETRRPSSSSTVLDTLGEEIVRIITPVSICMFLVVILVSILNTNDSPTISTIANIAYDETTSDSSWDKFLGALLNSLSFVVVVTFTTFFLVLLFYFRCIRFLKLYMAFSSFVVLGFLGGEISVFLIQHFSTPIDCITFSIVLVNFAVVGVCAVFMSKMAIFVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVRNDSLDPSDVAARRRLWRERRIENSNLITENENSVLGGSELNAEQSHSNQDANAVVSSSSNRNASNLNSSISYGPCNLVRAEEGRVQVRETDSDLATPLISHGMNTQVPGREDAASNENLMLEGIGLASSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLMLLAFYQKALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLMF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01838 451 PANTHER PRESENILIN 9 451 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vivi1g01838 451 Pfam Presenilin 18 441 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vivi1g01838 451 MobiDBLite consensus disorder prediction 276 301 - -
Vivi1g01838 451 SMART psh_8 71 437 IPR006639 GO:0004190|GO:0016020
Vivi1g01838 451 Gene3D Presenilin 348 443 IPR042524 -
Vivi1g01838 451 FunFam Presenilin 341 442 - -
Vivi1g01838 451 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vivi1g01838 451 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016020|GO:0016485
Vivi1g01838 451 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01838 1 451 Miscellaneous Gene Families AT2G29900 58.681 9.27e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01838 K04505 - gmx:100799643 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01838 1 39376455 39377903 Vivi1g01838 1 39376455 39377903 ECH