Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01831 ATGGCATTGCCTTCACCATCCAGTTTTGCCCCTTTTGTGTTTCTATTGCTCGTCATTGGGAGCGCGTCGGCAAGGCCTCTGTATCCACTTCCTGGCAAAGGTAATGATGGAACTAGACAGCCTCTTCAAACTTTTCGCCCATATAATATTGCCCACAGGGGTTCAAACGGAGAACTTCCCGAAGAAACTCATCAGGCTTACATGAGAGCTATTGAGGAAGGTGCGGACTTCATTGAAACTGATATCTTATCTTCCAAAGATGGTGTTCTTGTATGCTTCCATGATGTTACCCTTGATGATACTACTAACGTAGCAAATTACAAAGAGTTTGCTGGTCGTAAAAGAACATATGAAGTTCAAGGGGTCAATACCACTGGATATTTTATTGTGGATTTCACATTAAAGGAACTAAAGTCATTGAGGGTGAATCAGAGGTTTAGCTTTAGGGATCAACAATTTAACGGAAAATTTCAAATAATCACTTTTGAAGAGTTCATTACCATAGCATTGGACGCACCCAGAGTTGTTGGAATATATCCTGAAATAAAAAATCCAGTACTCATCAATCAGCATGTGAAATGGTCGGATGGAAAAAAGTTTGAGGACAAATTTGTGGAAACACTTCACAAATTTGGATACAAGGGTTCATACCTGTCAAAAAATTGGTTGGAACAACCTGTATTTATTCAGTCCTTTGCTCCAACTTCACTTGTGTATATATCAAATCAAACAGACTTGCCCAAGTTGTTTTTAATCGATGATGTTGATATTCCAACACAAGACACCAATCAGTCATATTGGGAAATTACATCTGATACATACCTAGACTACATAAAGCAATATGTTGTGGGAATCGGACCTTGGAAGGATACGATAGTTCCTGTGATGAATAATTATGCGATGACTCCTTCCGATCTTGTTTCCAGGGCACATGCTCGTAATCTGCAGGTGCATCCATACACTTATAGAAATGAGAACAAGTATTTGCATTTCAACTTTAGTCAAGATCCGTACAAGGAATACGATTACTGGATCAACAATATAGGAGTTGATGGTCTGTTTACAGATTTCACTGGTAGTCTTCATAATTTTCAGGAATGGACTGCTCCTAATCATCAGGATAGCAATACTGCATCCAAGCTCTTACATGAAATTGCTTTGTTGACATCCCCTTATGAATGA 1182 0.3892 MALPSPSSFAPFVFLLLVIGSASARPLYPLPGKGNDGTRQPLQTFRPYNIAHRGSNGELPEETHQAYMRAIEEGADFIETDILSSKDGVLVCFHDVTLDDTTNVANYKEFAGRKRTYEVQGVNTTGYFIVDFTLKELKSLRVNQRFSFRDQQFNGKFQIITFEEFITIALDAPRVVGIYPEIKNPVLINQHVKWSDGKKFEDKFVETLHKFGYKGSYLSKNWLEQPVFIQSFAPTSLVYISNQTDLPKLFLIDDVDIPTQDTNQSYWEITSDTYLDYIKQYVVGIGPWKDTIVPVMNNYAMTPSDLVSRAHARNLQVHPYTYRNENKYLHFNFSQDPYKEYDYWINNIGVDGLFTDFTGSLHNFQEWTAPNHQDSNTASKLLHEIALLTSPYE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01831 393 ProSiteProfiles GP-PDE domain profile. 47 365 IPR030395 GO:0006629|GO:0008081
Vivi1g01831 393 Pfam Glycerophosphoryl diester phosphodiesterase family 52 359 IPR030395 GO:0006629|GO:0008081
Vivi1g01831 393 FunFam Glycerophosphodiester phosphodiesterase GDPD5 45 364 - -
Vivi1g01831 393 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 43 374 - -
Vivi1g01831 393 CDD GDPD_ScGlpQ1_like 47 358 - -
Vivi1g01831 393 Gene3D Phosphatidylinositol (PI) phosphodiesterase 45 364 IPR017946 GO:0006629|GO:0008081
Vivi1g01831 393 SUPERFAMILY PLC-like phosphodiesterases 47 363 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01831 Vivi-Chr1 39213215 39217072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01831 11 392 Acyl Lipid Metabolism Gene Families AT1G74210 73.822 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01831 K01126 - gmx:100778145 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01831 1 39213215 39217072 Vivi1g01831 1 39213215 39217072 ECH