Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01827 ATGAGGTGGGAAAAGATTGAGGTTAAGGCGATAGGAAAAGAGGGTGAAGGTGGAGAACTCATATCTGGGCCAGGCAAAAGGTGGGGTCACACATGTAACTCCATTAATGGTGGTAGACATATCTATGTCTTTGGTGGTTATGGCAAAGATAACTGCCAAACTAATCAAGTTCATGTCTTTGACACTGTGAATCAGATATGGAGCCAGCCTGAAATAAAAGGCTCTCCGCCTACTGCTAGGGATAGTCACACTTGCAGTGTTATTGGTCATAAACTGTTTGTGTTTGGGGGTACTGATGGGATGAATCCACTCAAGGATTTGCATATTTTAGACACTTCTTTGCAAACATGGGATTCTCCGGTTATAAGAGGACAAGGGCCGGAGGCACGAGAGGGTCATAGCGCGGCTGTTGTTGGGAAACGGCTTTATATTTTTGGTGGTTGTGGAAAATCTGCTGATAATAACAATGAGGTTTACTACAATGATCTTTACATACTGAATACAGAGACGCTTGTTTGGATGCGCCCTACAACATCAGGCACACCACCATCTCCTCGTGATAGCCACACTTGCTCATCGTGGAAGAACAAAATTATTGTGATAGGGGGTGAAGATGGGCATGATTATTATTTGTCTGATGTTCATATCCTTGACACTGATACTCTAATGTGGAGGGAGCTGGGTACATCAGGCCAATTATTACCACCTCGGGCTGGTCATTCCACAGTTTCTTTTGGCAAGAATTTGTTCGTTTTCGGTGGATTTACAGACGCTCAAAATCTATACAATGACCTTTATATGCTTGATATTGATACTGGTATTTGGACAAACGTTACAACTACAACCAATTGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGGGTGGTGTTCTTGTGTTTATCGGCGGTTGTAATAAAAGTCTTGAAGCCCTGGATGATATGTATTACCTATATACAGGTATTGCTAGGGAAAGTGAACAGAGACCAGAGAAGTTATCTATGAAGAAGCAATTGAAGCTGAAATGCCAAGAAGAACAAAACCTCATTCCTGGCCAAAATCAAGTTATGGTTGGATATGGAGTGGGTGCTGATATTGGCCAGGTCATGAGTGTGCTGAATTATAACCAGCCAAATAGACCAAATATCCCAGTAAATCAATTGCTGCCTTCTCATGGAAAGAAATCATTTGAAGCCAAGGTTACTGAAAACATCTCTGAAGGATACACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAACAAAACCCTCTTCAGCCATCTGCTCATGCTCTTAGTAGGAAAAGGACTGCTGGTGAAATTGATGGTGGCATCTCAAATGGTACACATTCAAATATGTTTCCGAAAGTGCTTAAGCAAAGTCAAATGGAAAATAGACATCCAGAATCTCTCGGTCACAGTTCTGATGCTGTCGTTGCACTTGCAGCAAGCAATCCAATAACTGCCAATGCTTCTGTTAACCATAAGGTTGAACCAGAAGCTGCTTCTTTGAATCAAAATGCTGAAAAAACTGAAACACCAACCTTGGGGGAAAACATGAAAAATGATGGGGCAAATCATGGGACAAATTCCATAGTTGAAGACCAAACAAATGTTCAAACAAATGTGGTGATTCCTAACTTAGAAGCTTCAAGTCATGATAAAAATAACGACACACCAAACTGCAGCACAGAATTTCTGAAACCTGCCACAGCCGAGAGTGCTGTGAATTTCTCAAATCAAGGTGCAGTGGTGGATTCTACAACTCCAAGAACAGGAGAATGCAGTGAACCGACAAAATGA 1839 0.4138 MRWEKIEVKAIGKEGEGGELISGPGKRWGHTCNSINGGRHIYVFGGYGKDNCQTNQVHVFDTVNQIWSQPEIKGSPPTARDSHTCSVIGHKLFVFGGTDGMNPLKDLHILDTSLQTWDSPVIRGQGPEAREGHSAAVVGKRLYIFGGCGKSADNNNEVYYNDLYILNTETLVWMRPTTSGTPPSPRDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLMWRELGTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGIWTNVTTTTNCPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSMKKQLKLKCQEEQNLIPGQNQVMVGYGVGADIGQVMSVLNYNQPNRPNIPVNQLLPSHGKKSFEAKVTENISEGYTIETVIDGKPLRGILFLNKQNPLQPSAHALSRKRTAGEIDGGISNGTHSNMFPKVLKQSQMENRHPESLGHSSDAVVALAASNPITANASVNHKVEPEAASLNQNAEKTETPTLGENMKNDGANHGTNSIVEDQTNVQTNVVIPNLEASSHDKNNDTPNCSTEFLKPATAESAVNFSNQGAVVDSTTPRTGECSEPTK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01827 612 Gene3D - 176 328 IPR015915 GO:0005515
Vivi1g01827 612 Pfam Galactose oxidase, central domain 39 88 - -
Vivi1g01827 612 Gene3D - 13 175 IPR015915 GO:0005515
Vivi1g01827 612 SUPERFAMILY Galactose oxidase, central domain 21 228 IPR011043 -
Vivi1g01827 612 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 158 575 - -
Vivi1g01827 612 Pfam Galactose oxidase, central domain 185 230 - -
Vivi1g01827 612 Pfam Galactose oxidase, central domain 236 285 - -
Vivi1g01827 612 SMART kelc_smart 40 90 IPR006652 GO:0005515
Vivi1g01827 612 SMART kelc_smart 197 247 IPR006652 GO:0005515
Vivi1g01827 612 SMART kelc_smart 248 294 IPR006652 GO:0005515
Vivi1g01827 612 SMART kelc_smart 91 140 IPR006652 GO:0005515
Vivi1g01827 612 MobiDBLite consensus disorder prediction 590 612 - -
Vivi1g01827 612 Pfam Kelch motif 127 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01827 Vivi-Chr1 39144893 39151025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01827 54 313 Acyl Lipid Metabolism Gene Families AT3G05420 31.022 1.95e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01827 - - cam:101509662 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01827 1 39144893 39151025 Vivi1g01827 1 39144893 39151025 ECH