Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01792 ATGTCACTCACCCGCACCGCAATCCACCGTTTCCGTTACATCTACCGCACAATATCATCACCGTCCTCAACTCCTATCACTACTCGCTTTCAATTCCAACGCTTAATCACCTCTCATCCCATTCCCATTCTCAAACCCTACCAATTCCACTCTTCTTACTACTCCTCCTCCCTCAAACAAGACTTCGTCGGCGACGGCGATGAAGTTTATCCCACCGGTGACTTCAATTTCGAACCAGTTACCGGCTTCAACAAATTCATCGTCAAGCTAAAGATGCTAATAGCCTTACCCTGGGAGCGTGTTCAACACGGCAGCGTCTTGAAAATCGTTTTACGCGGCCAGATATCGGATCAGCTGAAAAGTAGATTCTCCAAGGGTTTATCTCTGCCTCAAATTTGTGATAATTTGTTGAAGGCAACTTATGATCCTCGAATTTCTGGCGTATATCTTCATATTGATACTTTAAATTGCGGTTGGGCTAAAGTTGAAGAAATTCGAAGACAGATCTTAAATTTCAGAAAATCTGGAAAATTTGTTGTGGCTTACGTCCCTTCGTGTCGAGAAAAAGAATATTACGTTGCTTGTGCATGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTCTGTTTGGATTGACTGTTCAAGCAGGATTTGTCAGAGGTTTTTTTGACAACCTTGGAATTGAACCACAAGTTGAAAGAATTGGCAAATTTAAAAGTGCAGGAGATCAACTAACCCGTAAAACCTTGTCTGAAGATAACCGTGAGATGCTGACCACATTACTGGATAATATCTATTCAAATTGGCTGGATAAAGTCTCTTTTGCTAGAGGAAAGAAAAGAGAAGATATCGAGAACTTTATTAACGAAGGTGTGTATCAAGTTGACAAACTGAAAGAAGAGGGTTTCATATCAAGCATACTCTATGATGACGAGGTTATGACTAGGTTGAAGGAGAGACTTCGGGTAACAGACAAAAATCTGCCTATTGTTGACTTCAGAAAATACTCTGGAGTTAGAAAATGGACTATTGGAATATCAGGTGGTAAAGAACTGATAGCCGTCATCCGAGCCTCAGGGGCCATTCGCCGTGCTGAGAGTCCTTTAAGTGCCCCTAGCAAAGGCATCATTGGAGAGAAGTTCATTGAGAAGATCCGTAGGGTCAGAGAGTCAAAGAAATTCAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTTTGGCGGCTTCAAAACCAGTTATTACTTCAATGTCTGATGTAGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAGGAACTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTTGTTTCAGGAAGATTTAACTTTGGGAAACTTTATGAGAAGATTGGTTTCAACAAAGAAATTATTTCAAGGGGTAAATATGCTGAACTCCATGCAGCTGAACAGCGCTCTTTAAGGCCACATGAAGCAGAGCTATTTGCCAAGTCTGCACAGAATATTTATAAACAATTTCGAGATAAGGCGGCTTTTTCCAGATCAATGGCTGTAGACAAGATGGAAGAGGTAGCACAGGGGAGGGTTTGGACGGGTAAGGATGCAGCATCTCATGGGTTGGTTGATGCTATTGGTGGGCTATCCCGTGCTATTGCTATAGCAAAATTAAAGGCTAATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTCTCAAGACCCAGTCCTTCTCTACCTGAGATTTTAAGCGGTCTAGGCAATTCTCTCGTTGGAGCTGACGAAACAATTAAGGAACTATTACATGACTCGACAATTTCTGATGGAGTTCAAGCACGGATGGATGGAATCATGTTACAGAAATTGGAAGGATATCCATCTCCCAACCCCATTTTGGCTTTGATGAAAGATTACCTCGGTTCTATGTAG 1965 0.4204 MSLTRTAIHRFRYIYRTISSPSSTPITTRFQFQRLITSHPIPILKPYQFHSSYYSSSLKQDFVGDGDEVYPTGDFNFEPVTGFNKFIVKLKMLIALPWERVQHGSVLKIVLRGQISDQLKSRFSKGLSLPQICDNLLKATYDPRISGVYLHIDTLNCGWAKVEEIRRQILNFRKSGKFVVAYVPSCREKEYYVACACEEIYAPPSAYFSLFGLTVQAGFVRGFFDNLGIEPQVERIGKFKSAGDQLTRKTLSEDNREMLTTLLDNIYSNWLDKVSFARGKKREDIENFINEGVYQVDKLKEEGFISSILYDDEVMTRLKERLRVTDKNLPIVDFRKYSGVRKWTIGISGGKELIAVIRASGAIRRAESPLSAPSKGIIGEKFIEKIRRVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVITSMSDVAASGGYYMAMGAGTIVAESLTLTGSIGVVSGRFNFGKLYEKIGFNKEIISRGKYAELHAAEQRSLRPHEAELFAKSAQNIYKQFRDKAAFSRSMAVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGADETIKELLHDSTISDGVQARMDGIMLQKLEGYPSPNPILALMKDYLGSM 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01792 654 SUPERFAMILY ClpP/crotonase 353 559 IPR029045 -
Vivi1g01792 654 PIRSF Protease_4_SppA 63 653 IPR004634 GO:0006465|GO:0008233|GO:0016020
Vivi1g01792 654 Gene3D - 213 279 - -
Vivi1g01792 654 Gene3D - 99 345 - -
Vivi1g01792 654 Gene3D - 350 499 - -
Vivi1g01792 654 CDD S49_SppA_67K_type 107 320 IPR047217 -
Vivi1g01792 654 CDD S49_Sppa_N_C 354 568 IPR047272 -
Vivi1g01792 654 SUPERFAMILY ClpP/crotonase 100 310 IPR029045 -
Vivi1g01792 654 NCBIfam signal peptide peptidase SppA 354 567 IPR004635 GO:0006508|GO:0008233
Vivi1g01792 654 Pfam Peptidase family S49 172 324 IPR002142 GO:0006508|GO:0008233
Vivi1g01792 654 Pfam Peptidase family S49 422 572 IPR002142 GO:0006508|GO:0008233
Vivi1g01792 654 Gene3D - 500 622 - -
Vivi1g01792 654 PANTHER PROTEASE 4 67 651 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01792 K04773 - gmx:100809623 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01792 1 38240699 38249968 Vivi1g01792 1 38240699 38249968 ECH