Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01758 ATGTCAAAGGTTAAAGTTGATCAACTCAATCAACTAAGAGAAATCTTCAAACGCTTCGACATGGATTCAGACGGAAGCCTAACAATGCTAGAGTTAGCAGCACTTATTCGTTCATTAGGTCTCAAACCCTCAGGTGACCAAGTTCAAGTTATGTTATCAAAAATGGACTCAAACAGAAACGGTTCTGTTGAGTTTGATGAGCTAGTAAGAGTCATAATGCCAAACATGAATGAAGAGGTGTTGGTGAATCAAGAACAACTCATAGGTGTGTTTAAGTGCTTTGATCGCGATGGAAATGGTTATATTTCGGCTGCTGAATTGGCTGGAGCCATGGCTAAAATGGGTCAACCTCTTACTTATAAAGAGCTTAGAGATATGATTAAAGAAGCTGATATGGATGGTGATGGTGTTATTAGTTTTAGTGAGTTTGCTACTATTATGGCTAGTTCTGCTTCTGATTTGTTAGGAGAGTTTTGTTATAGAAACAAAACTCATTCCTTTTAG 504 0.377 MSKVKVDQLNQLREIFKRFDMDSDGSLTMLELAALIRSLGLKPSGDQVQVMLSKMDSNRNGSVEFDELVRVIMPNMNEEVLVNQEQLIGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYKELRDMIKEADMDGDGVISFSEFATIMASSASDLLGEFCYRNKTHSF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01758 167 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Vivi1g01758 167 SUPERFAMILY EF-hand 7 149 IPR011992 -
Vivi1g01758 167 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Vivi1g01758 167 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Vivi1g01758 167 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Vivi1g01758 167 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Vivi1g01758 167 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Vivi1g01758 167 Gene3D - 1 77 - -
Vivi1g01758 167 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Vivi1g01758 167 CDD EFh 86 148 IPR002048 GO:0005509
Vivi1g01758 167 PANTHER CALCIUM BINDING PROTEIN 83 147 - -
Vivi1g01758 167 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Vivi1g01758 167 FunFam Probable calcium-binding protein CML15 1 77 - -
Vivi1g01758 167 FunFam probable calcium-binding protein CML18 78 154 - -
Vivi1g01758 167 Gene3D - 78 159 - -
Vivi1g01758 167 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Vivi1g01758 167 SMART efh_1 11 39 IPR002048 GO:0005509
Vivi1g01758 167 SMART efh_1 47 75 IPR002048 GO:0005509
Vivi1g01758 167 SMART efh_1 86 114 IPR002048 GO:0005509
Vivi1g01758 167 SMART efh_1 122 150 IPR002048 GO:0005509
Vivi1g01758 167 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01758 Vivi-Chr1 37852977 37853592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01758 7 156 EF-hand Containing Proteins AT1G18530 75.333 4.97e-82 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01758 K13448 - gmx:100795885 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01758 1 37852977 37853592 Vivi1g01758 1 37852977 37853592 ECH