Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01742 ATGCTACAAAACCCAAGAATACTGCGAACTTGCCCTCAACCATTCAACCTTCCAACTCAGACATCAACACCATCACCTTCATCACTCCAACTACTAGGCACAAGCCAACATTTCCCAATCCTCAAACAGCAATGTAGATTGTCGCGTAGAGAGCTAGCAATCTACAGCAATTCTTGCTTGCTGCTTCTTTTGGCTGATGGATCCAGGGCAAGAGCAGAAGATGTTACCAACAGTGACCAACTGGGGGATAGTTTGACTAACACTCCCAGCTGCACTGAAAGAAAACCTACAAAACAAGTTTTCTTCGACGTATCTGTTGATCGCGAACCGGTTGGTCGCGTTACTATAGAGCTCTATGGAGATGATGTCCCTGTAGGAGTTGAGAGGTTTAGCAAGATTGTCAGTGGAGCTGCTGGTATAAGCTACAGAAGGAAAGAGTTTGTCAAAATCCTGCCAAATTACGTACAACATGGCGGTCTTAGATCGTATGGGGTGGATGCAGAACTTGCTAACAAGACTGGGAGCAATTTGGCTACTGAAAGTCTTGTTGAGGAATGGGAGAGAATGTATGAGAAATGCCCTGGGACTAAAAATGTGGCTGGAAGTGTAGGAATCATTGTGAGAGATCCATCAAAACCACCTCCTAAGTTTAAACTGGTTGCAAGACTAGGAAAGCTTCAGATTGATCAGGAAGAAGTTGGAACAGATCCTAATGGGACAGAATTTGTCATTGCAACAAAGGATTCACCGGAATTAGATGCTTCGTCTCTGGTAATTGGAAGGGTGGTAGGAGGGATGGAAGTTGTGCAGAGGATTAGTGAAGTAAAAACTGTACAAGAGAATACAAGCTCTCCATACTTTAGGGTGGCAAAGCTTATCGGAGACAAGAGGGCTGTTGTAGCAGAAAGGGGATTCAACCGTCCTTACTCCAAAGTTGTTGTTACAAACTGTGGTGTAATACAGTAG 966 0.442 MLQNPRILRTCPQPFNLPTQTSTPSPSSLQLLGTSQHFPILKQQCRLSRRELAIYSNSCLLLLLADGSRARAEDVTNSDQLGDSLTNTPSCTERKPTKQVFFDVSVDREPVGRVTIELYGDDVPVGVERFSKIVSGAAGISYRRKEFVKILPNYVQHGGLRSYGVDAELANKTGSNLATESLVEEWERMYEKCPGTKNVAGSVGIIVRDPSKPPPKFKLVARLGKLQIDQEEVGTDPNGTEFVIATKDSPELDASSLVIGRVVGGMEVVQRISEVKTVQENTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVVVTNCGVIQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01742 321 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 321 IPR044185 -
Vivi1g01742 321 FunFam Peptidyl-prolyl cis-trans isomerase B 90 321 - -
Vivi1g01742 321 MobiDBLite consensus disorder prediction 74 92 - -
Vivi1g01742 321 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 104 284 IPR002130 GO:0000413|GO:0003755
Vivi1g01742 321 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 101 319 IPR002130 GO:0000413|GO:0003755
Vivi1g01742 321 MobiDBLite consensus disorder prediction 73 92 - -
Vivi1g01742 321 Gene3D - 88 321 IPR029000 -
Vivi1g01742 321 SUPERFAMILY Cyclophilin-like 96 320 IPR029000 -
Vivi1g01742 321 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 226 241 IPR002130 GO:0000413|GO:0003755
Vivi1g01742 321 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 241 253 IPR002130 GO:0000413|GO:0003755
Vivi1g01742 321 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Vivi1g01742 321 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 254 269 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01742 Vivi-Chr1 37620708 37622086 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01742 K03768 - gmx:100796313 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01742 1 37620708 37622086 Vivi1g01742 1 37620708 37622086 ECH