Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01632 ATGTCCATAAACTTACACCATCATGCCTTCGCCGGAAACCCTCTAAGATCAATTCCCGCCGATCAACTTTCACCCTCCGCCGCTCTCAAATCCCTCAACACCATAATTCTACAAAACAATCCTTCTCCTCCTTCTCCCAATTTCAAGGTACTTCCGTTCAGAAACGGAAGTCCTCTAGCCTCTTCCTCCGTTGGCTCCGATCACTCGCCGCCGATTTGGCATCTGGCTTGGATCAGTTTGGACGATCTTAAAGCCATCTTCAAAAGTTCAGGTGCCAAGCTGAATGGAGACTCATTGGTGTACTTGGGTTCGTCTGCAGAGGACGACGCTGTTTACTGGGCAATCGATGTTTCCGCTAAGGTACCTAAATTGGGTACCGATCCCAACGTGGGATCGCGGTTCGTAGAGCTCCGAACTCTCATGGTGGCCACCGATTGGGAAGATATCAAAGCAATGCAAAACCTAGCTATTGCTGGTCAAGCTAAGGCACTGCTAGAATGGCATAATATTTCTCAATTCTGTGGACATTGTGGAAAGAAAACTGTTTCTGTCGAAGCTGGGAGACGGAAGCAATGTTCTAATGACTCTTGCAAGAAAAGGATTTATCCCCGTGTTGACCCGGTGGTAATTATGCTTGTGATTGATAGAGAGAATGACTGCGTCCTCTTGGGTACACGACCGAAGGTTATTTCTCGAGTGTGGAGCTGCTTGGCTGGTTTCGCAGAGCAAGGAGAAAGCTTGGAGGAAGCTGTAAGAAGAGAAACTTGGGAAGAGAGTCGTATTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCATGGCCCCTTGGTTCAAATAGCATTCCATGCCAGCTGATGGTTGGGTTCTTCGCATATGCAAAATCCCGCGAAATAATTGTGGACAAGAAAGAGTTAGAAGATGTGAAGTGGTTCAGTAGAGAAGACATACGAAAAGCATTAACGTTGGCCGAATATAAAAAAGCCCAAAGAACAGCAGCATCAAAGGTAGAACAAATATGCAAGGGAGTAGAAAAGAGTAGGAGCTTGGCTGGAGATTTCAACGTGGAAAGTAGTGAACATGCTCCAATATTTGTTCCTGGACCTTTTGCAATAGCCCACCACCTTATTTCCTCTTGGGCCTTCTCAGATCAAAATGCCCATTAA 1164 0.4613 MSINLHHHAFAGNPLRSIPADQLSPSAALKSLNTIILQNNPSPPSPNFKVLPFRNGSPLASSSVGSDHSPPIWHLAWISLDDLKAIFKSSGAKLNGDSLVYLGSSAEDDAVYWAIDVSAKVPKLGTDPNVGSRFVELRTLMVATDWEDIKAMQNLAIAGQAKALLEWHNISQFCGHCGKKTVSVEAGRRKQCSNDSCKKRIYPRVDPVVIMLVIDRENDCVLLGTRPKVISRVWSCLAGFAEQGESLEEAVRRETWEESRIEVGEVVYHSSQPWPLGSNSIPCQLMVGFFAYAKSREIIVDKKELEDVKWFSREDIRKALTLAEYKKAQRTAASKVEQICKGVEKSRSLAGDFNVESSEHAPIFVPGPFAIAHHLISSWAFSDQNAH 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01632 387 ProSitePatterns Nudix box signature. 239 260 IPR020084 GO:0016787
Vivi1g01632 387 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 204 347 - -
Vivi1g01632 387 FunFam Nudix hydrolase 19, chloroplastic 204 383 - -
Vivi1g01632 387 Pfam NUDIX domain 207 321 IPR000086 -
Vivi1g01632 387 CDD NADH_pyrophosphatase 207 380 - -
Vivi1g01632 387 SUPERFAMILY Nudix 154 330 IPR015797 -
Vivi1g01632 387 ProSiteProfiles Nudix hydrolase domain profile. 203 333 IPR000086 -
Vivi1g01632 387 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 19 385 - -
Vivi1g01632 387 Pfam NADH pyrophosphatase zinc ribbon domain 171 201 IPR015376 GO:0016787|GO:0046872
Vivi1g01632 387 Gene3D - 66 203 - -
Vivi1g01632 387 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 50 167 IPR015375 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01632 Vivi-Chr1 34591558 34594025 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01632 K03426 - gmx:100793335 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01632 1 34591558 34594025 Vivi1g01632 1 34591558 34594025 ECH
Vivi1g01632 1 34591558 34594025 Vivi4g01581 4 63042679 63045750 PCT