Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01057 ATGACGATCGACTTAGATTCGATCACTCGCAAAGTCGATGTCGATAATCGCATTCCTCTCCGTTATTACTATCGGATTGCCGATAACCTTCTCAAGCAGGCGCGTATTTACAGGGAGGAGAATAATGTAGTTGACTTGTACATCATACTCCTTAGATTTATAAGTTTGATTTCCGAGACGATACCATATCATCGAGATTACCAAGCTTCACTTGCTAATGAAAGAGTGGCATTTAAGAGGAGATCACTACTTGTATTGGATGAGCTTGAGTCCTTGAAGCCTGAATTTAAACGCCGGTTGGACAAATTGAATAAACCACATGTACAAGCTCCATTGCCAGAAAAAAATGGGTTCAATACAGCTTTGCAGAGTCCAGCATATTCAAGTTTGGAATGGTCAGCTGTCAATAAAAGACATGACTCGAACATGGATTTCAAACAGTCTGCTGGAGTGGGCTCACAATCTTCATGGAAACCTAACAATACGTTATCTTCAATTTCCATGCCGGTTGACAAGCAGTTTCAGAAATTATCTCTGAGTCTACCCCCACCAAATAAGGAGACCTTGTCAAGACACTCATTTTTAGGTCCAAGTGGTCTTCGGGCACAATGGCTCGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTAATGATCTTATTCATGCCAAAGATTCAAGCGCTGTAAAGTATGATCTTGATGGCATTAAAGATGGTGATCAAGGATCACTTACATCCACAATGGATTCAATACTCTCCCTGGATGATGGAAGGTGGTCTCATCCTACTGTTGAGTCCTGTTCTCCTGTTGTAACTGAACCATGGGAGGACTCCTTACAGTTGCTCAACATCAAGCAACCTATGCCTCCTCCTGTTCTTGCTCAGGTTCACCCAGAACATGCTTCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCAGGACCGGCAAAATCTTCTCATGACTCTGAACTCGGTCCCACTACATATCAACACCTACACATTCCTGTAAAAATGATGGAAGATTTTCTGAGACTTGCTTCAGCAAACACGCGGAATAATTTAGAGACTTGTGGTGTTCTTGCAGGATCTCTGAAAAACAGGGTTTTTCAGATCACAACACTTATAATCCCAAAGCAGGAGGCGACTTCGGACTCGTGTCAAACGTTGGATGAAGGAGAAATATTTGACGTTCAAGACGGCTTGTCGCTTTTTCCTTTAGGTTGGATACATACACACCCGTCTCAGACTTGTTTCATGTCATCTGTGGATCTGCACACGCATTACGCATATCAGATCATGTTACCAGAGGCAATTGCAATAGTCATGGCTCCTACAGACACATCAAGTCCACATGGGATATTTCATCTGTCTGATCCAGGCGGTGTGTCTGTAATTCGCAACTGTCAACAACGTGGATTTCATCCCCATGAAGAGCCTTTAGATGGAAGTCCAATATATGAGCACTGCTCTCATGTCTATATGAATGCTAACATGAAGTTTGATGTTATTGACCTTCGAGAGAAATGA 1530 0.4255 MTIDLDSITRKVDVDNRIPLRYYYRIADNLLKQARIYREENNVVDLYIILLRFISLISETIPYHRDYQASLANERVAFKRRSLLVLDELESLKPEFKRRLDKLNKPHVQAPLPEKNGFNTALQSPAYSSLEWSAVNKRHDSNMDFKQSAGVGSQSSWKPNNTLSSISMPVDKQFQKLSLSLPPPNKETLSRHSFLGPSGLRAQWLGPSAEIKVQYPSSNDLIHAKDSSAVKYDLDGIKDGDQGSLTSTMDSILSLDDGRWSHPTVESCSPVVTEPWEDSLQLLNIKQPMPPPVLAQVHPEHASIPPSKVADPRPGPAKSSHDSELGPTTYQHLHIPVKMMEDFLRLASANTRNNLETCGVLAGSLKNRVFQITTLIIPKQEATSDSCQTLDEGEIFDVQDGLSLFPLGWIHTHPSQTCFMSSVDLHTHYAYQIMLPEAIAIVMAPTDTSSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPLDGSPIYEHCSHVYMNANMKFDVIDLREK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01057 509 ProSiteProfiles MPN domain profile. 333 463 IPR037518 -
Vivi1g01057 509 SUPERFAMILY USP8 N-terminal domain-like 4 104 - -
Vivi1g01057 509 FunFam AMSH-like ubiquitin thioesterase 3 318 509 - -
Vivi1g01057 509 SUPERFAMILY JAB1/MPN domain 332 463 - -
Vivi1g01057 509 Pfam USP8 dimerisation domain 4 99 IPR015063 -
Vivi1g01057 509 Gene3D Cytidine Deaminase, domain 2 317 509 - -
Vivi1g01057 509 Gene3D - 2 117 - -
Vivi1g01057 509 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 436 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi1g01057 509 PANTHER AMSH-LIKE PROTEASE 3 507 - -
Vivi1g01057 509 SMART pad1_6 332 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi1g01057 509 CDD MPN_AMSH_like 330 507 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vivi1g01057 509 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01057 Vivi-Chr1 22451855 22461854 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01057 K11866 - gmx:100812784 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01057 1 22451855 22461854 Vivi1g01057 1 22451855 22461854 ECH