Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01002 ATGTGTCCTTCTGGCCGTAACCTCCGTCTACAACCTCCCACATCCGATTTCCGTCCGGCGTTCGACGTTCTCGACACCGACTCCGACGGTAAAATAAGCCGAGAGGATCTCCGTTCATTCTACGCCACCAACAGCGGCGGTGTTAGCGGCGGCGATGACGCGATCGGTGCGATGATGTCGGTGGCGGACACGAACTTGAGCGGGTTCGTGGAGTACGAGGAATTCGAGAAGGTTGTTAGCGGTGAAGGAGAAAAGAGACCGTTAGGGTGTGGGGCGATGGAAGATGTGTTCAAGGTGATGGATAGAGACGGTGACGGTAAAGTTGGTTATGAGGATTTGAAGAATTATATGGCGTTGGCTGGGTTTGAGGCAAGCGATGAAGATATAAACGCTATGATTAGGTTGGGCGGTGGTGATGGAAACGGCGGTGTTAGCTTTGATGGTTTGATTCGTATATTAGCTTTTGATCATCTTGCTCTGGATAATTAA 489 0.5072 MCPSGRNLRLQPPTSDFRPAFDVLDTDSDGKISREDLRSFYATNSGGVSGGDDAIGAMMSVADTNLSGFVEYEEFEKVVSGEGEKRPLGCGAMEDVFKVMDRDGDGKVGYEDLKNYMALAGFEASDEDINAMIRLGGGDGNGGVSFDGLIRILAFDHLALDN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01002 162 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Vivi1g01002 162 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g01002 162 FunFam Calmodulin-2 A 10 156 - -
Vivi1g01002 162 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
Vivi1g01002 162 SUPERFAMILY EF-hand 15 154 IPR011992 -
Vivi1g01002 162 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Vivi1g01002 162 Gene3D - 8 160 - -
Vivi1g01002 162 ProSiteProfiles EF-hand calcium-binding domain profile. 93 123 IPR002048 GO:0005509
Vivi1g01002 162 Pfam EF-hand domain pair 17 79 IPR002048 GO:0005509
Vivi1g01002 162 PANTHER CALCIUM BINDING PROTEIN 16 78 - -
Vivi1g01002 162 Pfam EF hand 94 118 IPR002048 GO:0005509
Vivi1g01002 162 SMART efh_1 128 156 IPR002048 GO:0005509
Vivi1g01002 162 SMART efh_1 92 120 IPR002048 GO:0005509
Vivi1g01002 162 SMART efh_1 54 82 IPR002048 GO:0005509
Vivi1g01002 162 SMART efh_1 16 44 IPR002048 GO:0005509
Vivi1g01002 162 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01002 Vivi-Chr1 21329260 21330090 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01002 1 153 EF-hand Containing Proteins AT5G49480 52.469 1.56e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01002 K02183 - gmx:100527230 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g01002 1 21329260 21330090 Vivi1g01002 1 21329260 21330090 ECH