Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00216 ATGGGGAACAAATTGCATGGAATAGTGTTGTGTTTGTTGGTGTCGACTCTTTTGCTTTCTGCGGTATCATTTGCATCCAGTGATGGCCTCAGAAGGATTGGATTGAAAAAGATTAAATTTGACCCTAACAATAAGCTTGCTCAGAATGTTAAAAAGTATAATGGCCAAAACAATTTGCTTCGTTCCGAAGAAACTGATATTGTTGCATTGAAGAATTACCTAGATGCTCAGTACTATGGTGAAATATCTATTGGAACATCTCCTCAGAAGTTCACTGTGGTTTTTGATACTGGCAGCTCTAATTTGTGGGTTCCGTCCTCCAAATGTACCTTCTCGGTTGCATGCTACTTCCATGCCAAGTACAGGTCAACCAAATCAACTACATATAAGAAAAATGGGACTGCTGCTGCAATTCATTATGGTACTGGGGCAATTTCTGGCTTCTTTAGCTATGACAATGTCAAAGTTGGTGACATAGTTGTCAAAAATCAGGAATTTATTGAAGCAACTAAGGAGCCTAGTGTTACCTTTTTGGTGGCCAAATTTGATGGTATATTGGGACTTGGATTTCAAGAGATATCAGTTGGAAATGCCGTTCCAGTATGGTACAATATGGTTGAGCAAGGTCTTATTCAGGAACCAGTATTTTCATTTTGGTTCAACCGTAAACCGGAGGAAGAGGAAGGGGGTGAGATTGTTTTTGGTGGTGTTGATCCTGCTCACTACAAGGGAAATCACACTTATGTTCCTGTGACAAGAAAAGGATATTGGCAGTTTGATATGGAAGATGTAATTATTGGTGGTAATTCCACTGGATATTGTGCTGATGGCTGTTCGGCCATTGCTGACTCAGGGACTTCTTTGTTAGCAGGTCCAACGACTGTAATTACCATGATAAACGATGCAATTGGAGCATCTGGAGTTGCAAGCAAAGAGTGCAAGACCATTGTTGCGGAGTATGGTCAAACAATATTGGACCTGCTTTTATCTGAAGCACAGCCGAGGAAGATCTGTTCCCAAATTGGATTGTGTGCTTTTGATGGCACTCGTGGTGTTACTTTGGGTATCGAGAGTGTGGTTGATGAGAATGAAAGAAAATCATCTGGTGGTTTTCGCACTGCTACTTGTTCTGCCTGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAAGCAAAATAAGACCCAAGATCAGATACTAACCTATATCAATAATCTTTGTGATAAAATACCTAGTCCAATGGGAGAATCAGCTGTCGATTGTGAGAATATCTCTTCCTTGCCTGTAGTTTCCTTCACAATTGGTGGAAGAAATTTTGACCTTGCCCCAAAGGAGTACATACTTAAGGTGGGCGAAGGTCCTGCAGCTCAGTGCATCAGCGGCTTTATTGCTCTAGATGTTCCTCCTCCACAAGGCCCTCTCTGGATTCTTGGAGATATCTTCATGGGGAGTTACCACACAGTCTTTGATTTCGGTAAATCACGAGTCGGATTTGCTGAGGCAGCTTAA 1509 0.4182 MGNKLHGIVLCLLVSTLLLSAVSFASSDGLRRIGLKKIKFDPNNKLAQNVKKYNGQNNLLRSEETDIVALKNYLDAQYYGEISIGTSPQKFTVVFDTGSSNLWVPSSKCTFSVACYFHAKYRSTKSTTYKKNGTAAAIHYGTGAISGFFSYDNVKVGDIVVKNQEFIEATKEPSVTFLVAKFDGILGLGFQEISVGNAVPVWYNMVEQGLIQEPVFSFWFNRKPEEEEGGEIVFGGVDPAHYKGNHTYVPVTRKGYWQFDMEDVIIGGNSTGYCADGCSAIADSGTSLLAGPTTVITMINDAIGASGVASKECKTIVAEYGQTILDLLLSEAQPRKICSQIGLCAFDGTRGVTLGIESVVDENERKSSGGFRTATCSACEMAVVWMQNQLKQNKTQDQILTYINNLCDKIPSPMGESAVDCENISSLPVVSFTIGGRNFDLAPKEYILKVGEGPAAQCISGFIALDVPPPQGPLWILGDIFMGSYHTVFDFGKSRVGFAEAA 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00216 502 PRINTS Pepsin (A1) aspartic protease family signature 280 291 IPR001461 GO:0004190|GO:0006508
Vivi1g00216 502 PRINTS Pepsin (A1) aspartic protease family signature 230 243 IPR001461 GO:0004190|GO:0006508
Vivi1g00216 502 PRINTS Pepsin (A1) aspartic protease family signature 475 490 IPR001461 GO:0004190|GO:0006508
Vivi1g00216 502 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Vivi1g00216 502 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 500 IPR001461 GO:0004190|GO:0006508
Vivi1g00216 502 CDD phytepsin 68 500 IPR033869 GO:0004190
Vivi1g00216 502 Gene3D Acid Proteases 31 236 IPR021109 -
Vivi1g00216 502 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 280 291 IPR001969 GO:0004190|GO:0006508
Vivi1g00216 502 ProSiteProfiles Saposin B type domain profile. 372 413 IPR008139 -
Vivi1g00216 502 Gene3D Acid Proteases 237 502 IPR021109 -
Vivi1g00216 502 Pfam Saposin-like type B, region 1 375 411 IPR007856 GO:0006629
Vivi1g00216 502 Pfam Saposin-like type B, region 2 311 344 IPR008138 -
Vivi1g00216 502 ProSiteProfiles Saposin B type domain profile. 308 348 IPR008139 -
Vivi1g00216 502 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 93 104 IPR001969 GO:0004190|GO:0006508
Vivi1g00216 502 SUPERFAMILY Saposin 310 411 IPR011001 -
Vivi1g00216 502 Pfam Eukaryotic aspartyl protease 77 501 IPR033121 -
Vivi1g00216 502 FunFam Aspartic proteinase A1 308 411 - -
Vivi1g00216 502 Gene3D - 308 411 - -
Vivi1g00216 502 Coils Coil 43 63 - -
Vivi1g00216 502 ProSiteProfiles Peptidase family A1 domain profile. 78 499 IPR033121 -
Vivi1g00216 502 SUPERFAMILY Acid proteases 23 501 IPR021109 -
Vivi1g00216 502 FunFam Vacuolar aspartic proteinase 372 501 - -
Vivi1g00216 502 FunFam Lysosomal aspartic protease 64 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00216 Vivi-Chr1 4246983 4251556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00216 K08245 - gmx:100779619 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00216 1 4246983 4251556 Vivi1g00216 1 4246983 4251556 ECH
Vivi1g00216 1 4246983 4251556 Vivi1g00216 1 4246983 4251556 PCT