Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00196 ATGATAACAGTTTCCGATTGGATCCGTTCATCTTCGAATCAACACATCGATTTGTACAAGCAATGGTTCAACGTGGCCGATTCAGATGGCGATGGCCGCGTCACTGGAAATGATGCTATAAAGTTCTTCGCACTCTCCACCTTGTCTCGCCCTCAACTCAAGCAGGTTTGGGCGATTGCTGATACGAAGAGACAAGGTTTTTTAGGGTTTGATGAGTTTGTTACTGCAATGCAGCTCATTTCTGTGGGACAAGCAGGGTATGATCTCAACTCGGATATTCTAAAAACTGAGATTGACAGCGAAAAGATCAAACCTACAGTACTGGAAGGAATTGATGCATTAGTAGCAAATACAAAGAGTCCAACAATAAATGCACAACCCGATGTATATGGGACTGGCCAGCTTCAGCCTTTTCCACGGGTTACTTCAAAATCTGCAAAGAAGTTACCCCTCAATGCAGTGACATCAATAATAGATGGCTTGAAGAAGTTGTATGTGGAGCGGCTAAAACCGTTGGAGGCTACTTATCGATTCAATGATTTTGTATCTCCATTATTGACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTTCTCGGTCAATATTCTACTGGGAAAACAACATTCATTAAACACTTGCTAAGATGTGAATATCCAGGGGCGCACATTGGACCAGAACCCACGACTGACAGATTTGTCGCTGTCATGTCTGGAACTGATGAGAGGAGCATTCCTGGAAATACTGTAGCTGTTGATGCTAGCATGCCTTTTAGTGGCTTGACAAGTTTTGGTAGTTCTTTTTTGTCAAAGTTTCAATGCTCTCAAATGCCACATCCACTGCTAGATGAAATAACGTTTATCGACACCCCTGGTGTCCTCTCTGGAGAAAAGCAAAGGACTCAACGAAGTTATGACTTCACCGGTGTTATATCTTGGTTTGCTGCAAAATGTGATTTGATTCTTCTCCTATTTGATCCCCACAAACTTGACATTAGTGATGAATTTAAACGAGTGATTTCCTCTCTACGCGGTCAAGATGACAAAATACGTGTTGTTTTGAATAAGGCAGACCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCACTGATGTGGTCTTTGGGAAAAGTTCTGAATACCCCGGAAGTTGTACGTGTATATATTGGCTCATTCAATGATAAGCCTATCAATGAAGGTTTTGTCGGCCCATTAGGACAGGAGCTTTTTGAGAAAGAACAAAGCGATCTCCTTTCAGATTTGGCAGATATTCCAAGAAAGGCGTGTGACGGTCGGATCAATGAATTTGTCAAACGTGCGAGATCCGCTAAAATCCATGCCTATATAATTAGTCATCTTAAGATGCAGATGCCTGCAATGATGGGCAAAGCTAAGGTGCAACAAAGGCTTATAGATGATCTTGAAGATGAATTTAAAAAGGTTCAAAGGGAGTTTCATTTACCCGTTGGTGATTTTCCCAATGTAGATCACTTCAGAGAGGTTTTGAATACTTACAGCATTGACAAATTTGATAAATTGAAGCCTAAAATGGTTCAAGCTGTAGATGACATGCTTGGTTATGAAATACCAGAGCTGTTAAAAAAGTTTAGAAATCCTTATGAGTAA 1629 0.4076 MITVSDWIRSSSNQHIDLYKQWFNVADSDGDGRVTGNDAIKFFALSTLSRPQLKQVWAIADTKRQGFLGFDEFVTAMQLISVGQAGYDLNSDILKTEIDSEKIKPTVLEGIDALVANTKSPTINAQPDVYGTGQLQPFPRVTSKSAKKLPLNAVTSIIDGLKKLYVERLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCEYPGAHIGPEPTTDRFVAVMSGTDERSIPGNTVAVDASMPFSGLTSFGSSFLSKFQCSQMPHPLLDEITFIDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVISSLRGQDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINEGFVGPLGQELFEKEQSDLLSDLADIPRKACDGRINEFVKRARSAKIHAYIISHLKMQMPAMMGKAKVQQRLIDDLEDEFKKVQREFHLPVGDFPNVDHFREVLNTYSIDKFDKLKPKMVQAVDDMLGYEIPELLKKFRNPYE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00196 542 Gene3D - 161 533 - -
Vivi1g00196 542 Pfam Cytoskeletal-regulatory complex EF hand 14 80 IPR000261 GO:0005515
Vivi1g00196 542 SUPERFAMILY EF-hand 12 98 IPR011992 -
Vivi1g00196 542 SMART eh_3 6 103 IPR000261 GO:0005515
Vivi1g00196 542 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vivi1g00196 542 CDD EHD 196 440 - -
Vivi1g00196 542 ProSiteProfiles EH domain profile. 15 109 IPR000261 GO:0005515
Vivi1g00196 542 CDD EH 19 85 IPR000261 GO:0005515
Vivi1g00196 542 Pfam Dynamin family 197 356 IPR045063 -
Vivi1g00196 542 Coils Coil 465 485 - -
Vivi1g00196 542 Gene3D - 10 105 - -
Vivi1g00196 542 Pfam Domain of unknown function (DUF5600) 433 533 IPR040990 -
Vivi1g00196 542 SMART efh_1 18 46 IPR002048 GO:0005509
Vivi1g00196 542 SMART efh_1 52 80 IPR002048 GO:0005509
Vivi1g00196 542 PANTHER EH DOMAIN 13 539 - -
Vivi1g00196 542 Gene3D - 197 425 IPR027417 -
Vivi1g00196 542 FunFam EH domain-containing protein 1 197 425 - -
Vivi1g00196 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 434 IPR027417 -
Vivi1g00196 542 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 191 426 IPR030381 GO:0005525
Vivi1g00196 542 Pfam N-terminal EH-domain containing protein 160 192 IPR031692 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00196 Vivi-Chr1 3746599 3751814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00196 8 542 EF-hand Containing Proteins AT4G05520 73.743 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00196 K12483 - gmx:100803757 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00196 1 3746599 3751814 Vivi1g00196 1 3746599 3751814 ECH
Vivi1g00196 1 3746599 3751814 Vivi1g00196 1 3746599 3751814 PCT