Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00109 ATGTCAGCCTCAACAGATTCATCATCTCTTACTGCACAGGAAGATCAGCCTCCACAAATTCAACTACTAGCTTCAACAGATGATGATTATGACGGTGTTATCGTTGAAATCAACGACCTCGTTATGGATTCTGCAACCTTTTTGTCCATTCTTAGACCTTCAATTTCAAACTGGAAACAACAGGGCAAGAAGGGCGTTTGGATAAAATTACCTATTCATCTGGCCAACCTTGTTGAAACTTTAATTAAGGAAGGTTTTTGGTATCACCATGCAGAACCAAAATATTTGATGCTCGTACATTGGATTGCAGACAGTGCAAACACAATTCCGGCGAATGCCACACACCGAGTTGGTGTTGGAGCGTTTGTGGTGAATGAAAAACAAGAGGTTCTAGTGATTCAAGAAAAAACTGGACATTTTAAGGGAACTGGATCCTGGAAATTCCCTACTGGAGTTGCTGATCAGGGCGAAGAAATTTGGGAAGCAGCAGTTAGAGAGGTCAAAGAAGAAGCGGGAGTAGACTCCGAATTCGTTGAAGTACTAGCGTTCAGACAAAGTCACGCGTCATTCTTTGAGAAGTCAGATCTATTCTTTGTGTGTTTGTTGCGCCCTCTTTCTTCCGACATCAAAATCCAGGAAGTAGAGATAGAAGCTGGAAAGTGGATGCCGTTTGAAGAATATGCAGCGCAACCATTTATGGAAAAGTACGAGCTTTTGAGACAAATTAATGACATATACTTAGCAAAGGTTGATGGACATTATTCTGGATTTACTCCTGTATCTACAAAATCAAACTTTTCTAACCAGAAAAATAGCTATCTTTACTTGAATGCTGGAGGCTTGAAGAGGTCTAATTCTTTATAA 864 0.4028 MSASTDSSSLTAQEDQPPQIQLLASTDDDYDGVIVEINDLVMDSATFLSILRPSISNWKQQGKKGVWIKLPIHLANLVETLIKEGFWYHHAEPKYLMLVHWIADSANTIPANATHRVGVGAFVVNEKQEVLVIQEKTGHFKGTGSWKFPTGVADQGEEIWEAAVREVKEEAGVDSEFVEVLAFRQSHASFFEKSDLFFVCLLRPLSSDIKIQEVEIEAGKWMPFEEYAAQPFMEKYELLRQINDIYLAKVDGHYSGFTPVSTKSNFSNQKNSYLYLNAGGLKRSNSL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00109 287 Pfam Nudix hydrolase domain 23 102 IPR040618 -
Vivi1g00109 287 Gene3D - 20 106 - -
Vivi1g00109 287 Pfam NUDIX domain 115 233 IPR000086 -
Vivi1g00109 287 ProSiteProfiles Nudix hydrolase domain profile. 114 246 IPR000086 -
Vivi1g00109 287 SUPERFAMILY Nudix 81 242 IPR015797 -
Vivi1g00109 287 CDD Nudix_Hydrolase_12 115 246 - -
Vivi1g00109 287 ProSitePatterns Nudix box signature. 151 172 IPR020084 GO:0016787
Vivi1g00109 287 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 116 250 - -
Vivi1g00109 287 FunFam nudix hydrolase 2 20 107 - -
Vivi1g00109 287 FunFam Nudix hydrolase 8 116 254 - -
Vivi1g00109 287 PANTHER NUDIX HYDROLASE RELATED 4 282 IPR003293 -
Vivi1g00109 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 112 130 IPR003293 -
Vivi1g00109 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 96 112 IPR003293 -
Vivi1g00109 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 74 92 IPR003293 -
Vivi1g00109 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 200 224 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00109 Vivi-Chr1 1965422 1968867 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00109 K26956 - gmx:100819062 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00109 1 1965422 1968867 Vivi1g00109 1 1965422 1968867 ECH
Vivi1g00109 1 1965422 1968867 Vivi1g00109 1 1965422 1968867 PCT