Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00098 ATGGATGCTATGAATCAGTTACAGACATTCATCCAAAAAGTTGACGATCCATTGTTGCAGAAAACATTTCAGAATCTTCATCAAGGTTATGTTACTGAAACATTGACTCGATTTCTTAAAGCAAGGGATTGGGATCCTTCTAAGGCTTATCAAATGTTGATTGATTCTTTGAATTGGAGAGTACAAAATGAGATTGACAATATATTATCCAAACCAATTATTCCTGCCGAAGTATATAGAGCAATACGTGATTCACAACTCATTGGAGTGTCCGGGTACACAAGAGAGGGTCTTCCTGTCTTTTCAATTGGTGTTGGGCTTAGCACGTTTGACAAAGCATCCGTACATTATTATGTGCAGTCTCACATTCAAATGAATGAATATCGCGACCGTGTAATCTTGCCTTCTGTATCGAAGAAGCATGGTCGGCCTATTACCACTTGTGTTAAGGTTTTAGACATGACTGGTCTGAAGCTGTCGGCCCTGAATCAGATTAAGTTGTTAACGATTGTATCATCCATTGATGATCAGAACTACCCTGAGAAGACGCATACTTATTTCATTGTAAATGCGCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTGCAAGAGAGGACAAGAAGAAAAGTGCAGGTCTTACCAGGATGTGGACGAGATGAGCTGTTAAATATCATGGATTACCCATCTCTGCCACATTTCTGTAGAAAAGAAGGCTCTGGTTCATCCCCACATTTAGAAGGTGGAAGCGAAAATGTCTATTCTCTGGATCATCCCTTCCATCAACAGCTCTACGACTACGTCAAGCAGCAAGCCAGACTCCGGGAAGATGTTGCACCCATCAAACAGGGATCATTTCATGTGGTATTCCCCGAACCTCAGGATGTGGATACAAGGATTGCCAAGACTATAGAGTCGGAGTTTGATAGCTTAACCTTGAACGGTGATAAGGAACGTTTGAACAATTTGACTGAGACACGGGTCTAA 996 0.4127 MDAMNQLQTFIQKVDDPLLQKTFQNLHQGYVTETLTRFLKARDWDPSKAYQMLIDSLNWRVQNEIDNILSKPIIPAEVYRAIRDSQLIGVSGYTREGLPVFSIGVGLSTFDKASVHYYVQSHIQMNEYRDRVILPSVSKKHGRPITTCVKVLDMTGLKLSALNQIKLLTIVSSIDDQNYPEKTHTYFIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLNIMDYPSLPHFCRKEGSGSSPHLEGGSENVYSLDHPFHQQLYDYVKQQARLREDVAPIKQGSFHVVFPEPQDVDTRIAKTIESEFDSLTLNGDKERLNNLTETRV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00098 331 CDD SEC14 79 237 IPR001251 -
Vivi1g00098 331 Pfam CRAL/TRIO domain 86 237 IPR001251 -
Vivi1g00098 331 SMART CRAL_TRIO_N_2 31 56 IPR011074 -
Vivi1g00098 331 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 75 258 IPR001251 -
Vivi1g00098 331 Gene3D - 2 281 IPR036865 -
Vivi1g00098 331 SUPERFAMILY CRAL/TRIO N-terminal domain 9 72 IPR036273 -
Vivi1g00098 331 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 3 316 - -
Vivi1g00098 331 SMART sec14_4 82 243 IPR001251 -
Vivi1g00098 331 Pfam CRAL/TRIO, N-terminal domain 21 55 IPR011074 -
Vivi1g00098 331 SUPERFAMILY CRAL/TRIO domain 77 274 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00098 Vivi-Chr1 1790104 1794735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00098 2 311 Acyl Lipid Metabolism Gene Families AT5G47730 70.323 1.67e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00098 K26544 - tpra:123905874 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00098 1 1790104 1794735 Vivi1g00098 1 1790104 1794735 ECH
Vivi1g00098 1 1790104 1794735 Vivi1g00098 1 1790104 1794735 PCT