Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00074 ATGTTGCAGTGCCTAAAGCATTTGTGTGGTGCTGTAATAAATTGTTGCGATTCTGATTCGTTAAATCAACCTAGAGGTTTAGAAAATCCAGAACTTCTTGCAAGAGAGACTGTGTTTAGTGTAAGTGAGATTGAAGCACTTTATGAACTCTTCAAGAAGATCAGCAGTGCGGTGATTGACGATGGGCTAATTAATAAGGAAGAATTTCAGTTGGCACTGTTCAAGTCAAACAAGAAGGAGAGCTTATTTGCAGACAGGGTGTTTGACTTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTGTCTGTTTTTCATCCCAACGCAACAATTGATGATAAGATTGAGTTTTCTTTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGACAGGAGGTAAAACAAATGGTGGTGGCTACTCTAGCTGAGTCTGGTATGAATCTTTCAGATGACGTGATCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAAAATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAACATGACTCTTCAGTATTTAAAAGATATAACCACCACATTTCCTAGTTTTGTTTTTCACTCGCAAGTTGATGATACTTGA 672 0.381 MLQCLKHLCGAVINCCDSDSLNQPRGLENPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKSNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNATIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHSQVDDT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00074 223 Gene3D - 29 223 - -
Vivi1g00074 223 PRINTS Recoverin family signature 87 108 - -
Vivi1g00074 223 PRINTS Recoverin family signature 134 152 - -
Vivi1g00074 223 PRINTS Recoverin family signature 180 200 - -
Vivi1g00074 223 ProSiteProfiles EF-hand calcium-binding domain profile. 160 195 IPR002048 GO:0005509
Vivi1g00074 223 PANTHER CALCINEURIN B 14 222 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vivi1g00074 223 FunFam calcineurin B-like protein 3 29 222 - -
Vivi1g00074 223 Pfam EF-hand domain pair 61 106 IPR002048 GO:0005509
Vivi1g00074 223 SMART efh_1 83 111 IPR002048 GO:0005509
Vivi1g00074 223 SMART efh_1 164 192 IPR002048 GO:0005509
Vivi1g00074 223 SMART efh_1 120 148 IPR002048 GO:0005509
Vivi1g00074 223 ProSiteProfiles EF-hand calcium-binding domain profile. 116 151 IPR002048 GO:0005509
Vivi1g00074 223 SUPERFAMILY EF-hand 30 215 IPR011992 -
Vivi1g00074 223 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vivi1g00074 223 Pfam EF-hand domain pair 119 187 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00074 Vivi-Chr1 1491203 1497170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00074 1 223 EF-hand Containing Proteins AT5G55990 87.611 1.28e-142 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00074 K06268 - gmx:100791045 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00074 1 1491203 1497170 Vivi1g00074 1 1491203 1497170 ECH
Vivi1g00074 1 1491203 1497170 Vivi1g00074 1 1491203 1497170 PCT