Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03927 ATGGCGAGTAAGCGGAAAAATGGTGCGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTGGTGGGAAATGAACAGGTTTTCAGCAACTTTGTGGACAATAAGTTTGAGGAGTTGGATAAGGACAGAGATGGGAAACTCTCCATGAAGGAGCTTGAACCTGCTGTTGCTGACATCGGTGCTGGCCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTATGAGGTCTTGAATGAGTTCACCCATGGCAAGCAAGAAAAAGTAAGCAAGATGGAGTTCAAAGAGGTCCTCTCAGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCGAGACCCTATTGTTATACTTCGCATGGAAGGGGAAGATCTACTTGAGTTTGTGAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTCTCTCAGATTGAGTCCCCAAGTGGATCACTTCGTGAACATGTAATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAGTTCCTCCCACGTCAGATTCTTGGGTTTTCAACAACGTTGTGGATCCAGCACTGTCTCAAGCTGGGCCTGCTTTGGACAAACCTGCTGCTCAGGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTCAGTGTGGTTGATATTCTTAAAGAGAAACCTGTCATTGTCGCCCACAGTGAAAACACATTTGATGGACGCGGCGTTAAGAGACTTTTATCCAACAAGTTTGAACTAGAACGGACTTTGAACTTGGCTTTAGAGAATCTGCCAAAAGATCGCAATGGAAAAATATCAAAGGACTATCTGCGGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAAGTTATCGTTGAAGCCTTTAAGATGGTGAATGCCGATGACACAAACACGGTTACAGAAGAAGAATTCAAGAAAAGTTTAACTGAAATATTGGGGGGTATCATGTTGCAGTTAGAGGGCAATCCCATATCTGTTTCTTCAAACTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTTCTAGTGAGACAGCATAG 1104 0.4402 MASKRKNGAKGEIVDGSKIMELVGNEQVFSNFVDNKFEELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYYEVLNEFTHGKQEKVSKMEFKEVLSDILLGMAAGLKRDPIVILRMEGEDLLEFVNGPSYEAEMASIFSQIESPSGSLREHVIEAFGRLTVDQGVPPTSDSWVFNNVVDPALSQAGPALDKPAAQETFLEEFKKVAFSVVDILKEKPVIVAHSENTFDGRGVKRLLSNKFELERTLNLALENLPKDRNGKISKDYLRVALDLVSPSAGLPPVGAIEEMDKVIVEAFKMVNADDTNTVTEEEFKKSLTEILGGIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSSSETA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03927 367 ProSitePatterns EF-hand calcium-binding domain. 41 53 IPR018247 -
Viun9g03927 367 SUPERFAMILY EF-hand 36 337 IPR011992 -
Viun9g03927 367 Gene3D - 10 114 - -
Viun9g03927 367 SMART efh_1 253 281 IPR002048 GO:0005509
Viun9g03927 367 SMART efh_1 299 327 IPR002048 GO:0005509
Viun9g03927 367 SMART efh_1 32 60 IPR002048 GO:0005509
Viun9g03927 367 ProSiteProfiles EF-hand calcium-binding domain profile. 295 330 IPR002048 GO:0005509
Viun9g03927 367 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 12 123 - -
Viun9g03927 367 ProSiteProfiles EF-hand calcium-binding domain profile. 28 63 IPR002048 GO:0005509
Viun9g03927 367 Gene3D - 135 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03927 Viun-Chr9 43377725 43381698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03927 12 366 EF-hand Containing Proteins AT4G38810 65.460 2.39e-170 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03927 - - gmx:100787083 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03927 9 43377725 43381698 Viun9g03927 9 43377725 43381698 ECH