Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03903 ATGGCACTTTCCAACCTTTTCCCATTTCTTCTTCTTCTTCTCCTTCTCCCCTCTCTCTCCGTCACTGCTCACGATTACCAGCAGGCATTGTCCAAGGCAATCCTCTTCTTCGAGGGGCAACGCTCCGGATTCTTGCCGCAGGACCAGAGAATGCAGTGGCGCGCCAATTCGGGTCTCGGCGACGGCTGGACCTACAACGTCGACCTCACCGGCGGCTACTACGACGCCGGCGACAACGTCAAGTTCGGCTTTCCGATGGCATTCACCACCACAATGCTCTCCTGGAGTGTCATCGAATTCGGAGACATGATGCCTCCCGACGAGCACAGAAACGCGCTGGTCGCAATCCGTTGGGCTACCGATTATCTGCTCAAAACCGTTTCTCAGCCCAACCGCATTTTCGTTCAGGTAGGTGATCCAATCTCTGATCACAACTGTTGGGAAAGACCAGAGGACATGGACACAAGAAGGACTGTGTACGCTGTTGATGCACCGAACCCAGCCTCAGATGTGGCTGGTGAAACTGCTGCGGCACTAGCTGCTTCGTCCATGGCGTTTCGTTCATCGGATCCTGCTTATTCAGAGACTTTGCTACGAAATGCTGTCAAGGCATTTCAACTTGCAGATAACTATAGAGGTGCCTACAGTGACAATGCTGATGTTAGGGATGGTGTCTGCCCATATTATTGCGACTTCGATGGATATCAGGACGAATTGTTATGGGGAGCCGCATGGCTAAGAAGGGCCACTCAAGACGACAATTTCCTGAATTACATTCAAAGCAATGGCAAAACGCTCGGTGCTGAAGAAAATATAAATGAGTTCGGTTGGGACAACAAGCATGCCGGCCTTAATGTTCTTGTCTCTAAGGAAGTTCTAGAAGGAAATGTACTATCTCTTGATTCCTACAAGACTTCGGCAGAGAGTTTTCTGTGCACGCTGATACCCGAAACATCAAGCTCACACATAGAGTACACTCCCGGTGGACTCATATACAGACCAGGGGGTAGCAACTTGCAGCATGCAACCTCAATTGCTTTCCTTGAATTGGTTTACGCTAATTACCTATCACGCACTTCACAAACCATCAATTGTGGGAACATGTATGTTAATGCACAAACACTTCGCCAACTTGCTAAGAAGCAAGTTGATTACATTTTGGGCGATAACCCAATGGGTATGTCGTACATGGTTGGGTATGGCAGCAAGTATCCACAGCGTATTCACCATCGTGGCTCCTCTTTACCCTCCATCAAGGACCATCCTCAAGTCATTGCCTGCAAAGAAGGCTCAATCTACTTCAACTCCTCCAATCCTAATCCTAATGTTCTGGTGGGAGCCATTGTTGGAGGACCAGGAGAAGATGATCTCTATGGGGATGATAGGGCTGATTTTAGGAAGTCCGAACCAACCACATACATTAATGCACCATTCGTTGGGATCTTAGCATACTTTGTTGCTAATCCCAATCCATGA 1476 0.4858 MALSNLFPFLLLLLLLPSLSVTAHDYQQALSKAILFFEGQRSGFLPQDQRMQWRANSGLGDGWTYNVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGDMMPPDEHRNALVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTRRTVYAVDAPNPASDVAGETAAALAASSMAFRSSDPAYSETLLRNAVKAFQLADNYRGAYSDNADVRDGVCPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGAEENINEFGWDNKHAGLNVLVSKEVLEGNVLSLDSYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNMYVNAQTLRQLAKKQVDYILGDNPMGMSYMVGYGSKYPQRIHHRGSSLPSIKDHPQVIACKEGSIYFNSSNPNPNVLVGAIVGGPGEDDLYGDDRADFRKSEPTTYINAPFVGILAYFVANPNP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03903 491 FunFam Endoglucanase 22 490 - -
Viun9g03903 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 385 411 IPR018221 -
Viun9g03903 491 Gene3D - 22 489 IPR012341 GO:0005975
Viun9g03903 491 Pfam Glycosyl hydrolase family 9 26 482 IPR001701 GO:0004553|GO:0005975
Viun9g03903 491 SUPERFAMILY Six-hairpin glycosidases 22 488 IPR008928 GO:0005975
Viun9g03903 491 PANTHER ENDO-1,4-BETA-GLUCANASE 11 486 - -
Viun9g03903 491 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 458 476 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03903 Viun-Chr9 43234725 43238616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03903 4 488 Glycoside Hydrolase AT1G70710 60.370 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03903 K01179 - gmx:100799911 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03903 9 43234725 43238616 Viun9g03903 9 43234725 43238616 ECH