Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03898 ATGAGTTCAGACAGCCGCAGCAGGAGCCGGAGCAGAAGCAGGAGCCCAATGGACCGTAAGATCCGATCTGATCGATTTTCCTACCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAGAGGCCTGGTCATTATGCAAGGGAATGCCCTAATGTTGCAATCTGCCACAACTGTGGCCTCCCTGGGCACATTGCTTCTGAATGTACCACAAAGTCACTCTGCTGGAACTGTAAAGAACCTGGCCACATGGCCAGTAATTGTCCAAATGAGGGAATTTGCCATACCTGTGGTAAAGCTGGACACCGTGCTAGGGAATGCACCGCTCCTCCAATGCCTCCAGGAGATTTAAGGTTGTGCAACAACTGTTATAAGCAGGGCCACATAGCAGCTGAATGTACGAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGCCACTTGGCACGTGATTGTCCTAACGATCCTATTTGTAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCCAATGTGATTGGAGATCGCAGTGGTGGTGCCGGAGGCGGTGCAGCTCGTGGTGGTGGGGGTGGGGGTGGTTACCGAGATGTTATTTGCAGGAACTGCCAGCAATTAGGTCACATGAGTAGGGATTGCATGGGCCCCTTGATGATTTGCCACAATTGTGGAGGTCGTGGTCACCTGGCATACGAGTGCCCTTCAGGTCGGTTTATGGATCGCTACCCCAGGAGGTATTGA 780 0.5167 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANVIGDRSGGAGGGAARGGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03898 259 SUPERFAMILY Retrovirus zinc finger-like domains 202 250 IPR036875 GO:0003676|GO:0008270
Viun9g03898 259 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 212 228 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g03898 259 SUPERFAMILY Retrovirus zinc finger-like domains 37 82 IPR036875 GO:0003676|GO:0008270
Viun9g03898 259 Gene3D - 208 250 - -
Viun9g03898 259 Gene3D - 10 81 - -
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 233 248 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Gene3D - 82 101 - -
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 212 226 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 232 248 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 213 226 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 SUPERFAMILY Retrovirus zinc finger-like domains 125 165 IPR036875 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 PANTHER - 7 254 - -
Viun9g03898 259 Gene3D - 102 146 - -
Viun9g03898 259 Gene3D - 147 197 - -
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Viun9g03898 259 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03898 Viun-Chr9 43207238 43212127 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03898 K09250 - gmx:100775501 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03898 9 43207238 43212127 Viun9g03898 9 43207238 43212127 ECH