Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03865 ATGCCAGCAGTGATCACCTCCCAGCTCCGATCCCCTCTCAGCGTCTTCTTTCTCTTCCGGCGACGAAGCGCGTCTCCTCAAGGTCATTACGCATCCAAAGTTTCGCGCTTCGCCTTCACATCGATTCCGCTGCACTTCCAAAAGAGTTGGTTGTGCAGTTCTTGTTTTCGGAAACCATCTTTAAGGTTCTGTCGGCGTTTGAGTTCTGTAATGGCCAGTGATTTTTCTGTCATCTCCAATGGAGACAGCAATGGCAATGTCAATCCACAACCTAATAAGCAAAGGACTTACCAAGTGGTAGTGGCTGCCACTCAAGATTGGGGCATTGGCAAGGATGGGAAGTTACCCTGGAGATTGCCTACTGATCTCAAATTTTTTAAGGAGATCACTGAGAAAACATCTGATCCTGGAAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTCAGTACAGGCCTCTTTCTGGTCGCCTTAACATTGTTCTCACTCGCTCAGGCAGCTTTGATATTGCAACGTCAGAGAATGTTGTTATATGTGGAAGTATGTATTCTGCATTGGAAATATTAGCTTCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATTGGAGGTGGTCAAATATTTAGAGAGGCTCTCAATGCACCCGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAACATCGAATGTGACACTTTTATGCCTTCAGTTGATTTCACTATATTTCGGCCGTGGTACTCATCCTTTCCTAAGGTGGAAAACAACATACGCTATTCTTTCATCACTTATGTTCGTGTAAGGAGTTCTCCTTTGGAGTCCCTGAACCAGAATATCGATCCAGTTATTGATAATAATTATGATTCCATAAAATTTGAGGTCAAGGATTTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACATGAGGAGAATATGTATCTTAAGCTGGTTCAAGAGATCATTTCTGAAGGTACAATAAAGGGTGATAGGACGGGGACTGGCACCTTGTCAAAATTTGGTAGCCAGATGAGATTCAATTTACGCAGAAGCTTTCCTCTTCTGACAACTAAGAAAGTATTTTGGCGAGGAGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACAAATGCCAAGGTGCTACAGGAAAAAAACATTCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGGTACACGGACATGCATGCTGACTACTCCGGCCAAGGGTTTGATCAGCTTTTAGACGTTATTAGCAAGATAAAGCATAATCCTGATGATCGACGAATCATTCTTTCTGCGTGGAATCCAGCTGATCTTAAATTAATGGCACTTCCACCTTGTCACATGTTTGCACAGTTTTATGTATCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTCTGACATGCATGATTGCTCATGTTTGTGATCTAATTCCAGGTGATTTTATCCATGTTATTGGGGATACACATGTTTATAGTAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAAACTTCCAAAACCTTTTCCAACTTTGAAGATAAATCCAAAGAAGAAAGACATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGATGGCTGTCTAA 1803 0.4221 MPAVITSQLRSPLSVFFLFRRRSASPQGHYASKVSRFAFTSIPLHFQKSWLCSSCFRKPSLRFCRRLSSVMASDFSVISNGDSNGNVNPQPNKQRTYQVVVAATQDWGIGKDGKLPWRLPTDLKFFKEITEKTSDPGKKNAIVMGRKTWESIPLQYRPLSGRLNIVLTRSGSFDIATSENVVICGSMYSALEILASSPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSNIECDTFMPSVDFTIFRPWYSSFPKVENNIRYSFITYVRVRSSPLESLNQNIDPVIDNNYDSIKFEVKDFSFLPKMIFERHEENMYLKLVQEIISEGTIKGDRTGTGTLSKFGSQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKNIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHADYSGQGFDQLLDVISKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVSHGELSCQMYQRSADMGLGIPFNIASYALLTCMIAHVCDLIPGDFIHVIGDTHVYSNHVRPLQEQLHKLPKPFPTLKINPKKKDIDSFVAADFKLIGYDPHQKIDMKMAV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03865 600 PANTHER THYMIDYLATE SYNTHASE 1 119 600 IPR045097 GO:0016741
Viun9g03865 600 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 96 273 IPR001796 GO:0004146|GO:0046654
Viun9g03865 600 FunFam Possible thymidylate synthase 311 600 - -
Viun9g03865 600 CDD TS_Pyrimidine_HMase 320 553 IPR023451 -
Viun9g03865 600 Hamap Thymidylate synthase [thyA]. 317 600 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 299 600 IPR036926 -
Viun9g03865 600 PIRSF DHFR-TS 75 600 IPR012262 GO:0004146|GO:0004799|GO:0006730
Viun9g03865 600 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 79 274 - -
Viun9g03865 600 Pfam Thymidylate synthase 319 600 IPR023451 -
Viun9g03865 600 Gene3D Dihydrofolate Reductase, subunit A 81 275 IPR024072 -
Viun9g03865 600 CDD DHFR 100 272 IPR001796 GO:0004146|GO:0046654
Viun9g03865 600 ProSitePatterns Thymidylate synthase active site. 462 490 IPR020940 GO:0004799|GO:0006231
Viun9g03865 600 NCBIfam thymidylate synthase 319 600 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 PRINTS Thymidylate synthase family signature 477 492 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 PRINTS Thymidylate synthase family signature 495 521 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 PRINTS Thymidylate synthase family signature 533 550 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 PRINTS Thymidylate synthase family signature 358 379 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 PRINTS Thymidylate synthase family signature 451 470 IPR000398 GO:0004799|GO:0006231
Viun9g03865 600 Pfam Dihydrofolate reductase 98 273 IPR001796 GO:0004146|GO:0046654
Viun9g03865 600 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 309 600 IPR036926 -
Viun9g03865 600 SUPERFAMILY Dihydrofolate reductase-like 90 273 IPR024072 -
Viun9g03865 600 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 108 130 IPR017925 GO:0004146
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03865 Viun-Chr9 43028158 43039042 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03865 K13998 - gmx:547833 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03865 9 43028158 43039042 Viun9g03865 9 43028158 43039042 ECH