Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03840 ATGAGTTCCGACACGAACACGAACACGGACACGACGGCGACAACCTCGAAGGAGTCGAAAACAAGGTTACCGGATTTTTCGCAGAGCGTGAAGCTGAAGTATGTGAAACTGGGGTACCATTATCTGATGTCACACCTGGTGACTCTGTGTCTGCTCCCTCTCATGTCCGTAATCCTCATACAAGCTTCTCAGATGGAGGCGCAGGAGATTCAGGAGCTCTGGGCCCACCTCCAGTACAACCTCCTCAGCGTCATCGCTATATCCGCCATCCTCGCCTTGGGATCCACCCTCTACATCATGACCCGACCCACATCCATCTACCTCCTCGACTTCTCCTGCTACCGTCCCCCCCACCACCTCACCGTCCACTTCCAAAAGTTCATCCACCACTCCACCCTCACCGGCGACTTCCTCCCCTCCTCCATCGATTTCCAGCGCAAGATTCTCCTCCGCTCCGGCCTCGGCGAGGAAACCTACCTCCCCGAGGCCATGCACTCCATCCCCCCCCGCCCCTCCATGGCCGCCGCCAGGGAAGAGGCCGAGCAGGTCATGTTCGGCGCCCTCGACAACCTCTTCGCCAACACCCGCGTCAAGCCCAAGGACATCGGAATCCTCGTCGTCAATTGCAGCCTCTTCAACCCCACCCCCTCCCTCTCCGCCATGATCGTCAACAGGTACAAGCTCCGTGGCAATGTCAAAAGCTTCAACCTTGGCGGCATGGGCTGCAGCGCCGGCGTCATCGCCATCGATCTCGCCAAAGACATGCTCCAGGTTCACCGCAACACTTACGCCGTCGTCGTCAGCACCGAGAACATCACTCAGAATTGGTACTTCGGGAACAACAAGGCCATGTTGATACCCAATTGCCTCTTCCGCGTCGGTGGGGCCGCCATTCTCCTCTCCAACAAAAGCTCCGACAGGAGGCGAGCCAAATACAAGCTCCTGCACGTGGTGAGGACTCACAAAGGGGCGGATGACAAGGCCTTTCGGTGCGTGTACCAGGAACAAGACGATGCCGGAAAAACCGGCGTGTCTTTGTCGAAGGATCTCATGGCTATTGCCGGTGGGGCTCTCAAGACTAACATAACCACTCTGGGTCCCCTTGTTTTGCCTATAAGCGAGCAACTTCTTTTCTTTCTCACACTTGTCGTGAAAAAGCTTTTCAACGCGAAGATGAAGCCTTACATCCCTGATTTCAAGCTCGCGTTTGACCATTTCTGCATTCACGCCGGTGGAAGGGCCGTTATTGATGAGCTGGAGAAGAATCTGCAGCTTCTGCCTCTGCACGTGGAGGCTTCCAGGATGACGCTGCACAGGTTCGGGAACACCTCGTCGAGTTCGATTTGGTACGAGTTGGCTTACACGGAGGCGAAGGGGAGGATGAGAAAGGGGAACAGAGTGTGGCAGATTGCGTTCGGGAGTGGCTTTAAGTGTAACAGTGCGGTGTGGGAAGCTCTCAGACACGTCAATCCCTCACCCAAATCTCCATGGGAAGATTGCATTCATAAGTACCCTGTTCAGATTGCATAG 1530 0.5562 MSSDTNTNTDTTATTSKESKTRLPDFSQSVKLKYVKLGYHYLMSHLVTLCLLPLMSVILIQASQMEAQEIQELWAHLQYNLLSVIAISAILALGSTLYIMTRPTSIYLLDFSCYRPPHHLTVHFQKFIHHSTLTGDFLPSSIDFQRKILLRSGLGEETYLPEAMHSIPPRPSMAAAREEAEQVMFGALDNLFANTRVKPKDIGILVVNCSLFNPTPSLSAMIVNRYKLRGNVKSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAILLSNKSSDRRRAKYKLLHVVRTHKGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFLTLVVKKLFNAKMKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPLHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNRVWQIAFGSGFKCNSAVWEALRHVNPSPKSPWEDCIHKYPVQIA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03840 509 Pfam FAE1/Type III polyketide synthase-like protein 98 387 IPR013601 GO:0006633|GO:0016020|GO:0016747
Viun9g03840 509 SUPERFAMILY Thiolase-like 94 310 IPR016039 GO:0016746
Viun9g03840 509 CDD CHS_like 88 483 - -
Viun9g03840 509 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 484 IPR013747 -
Viun9g03840 509 PIRSF Very_long_ch_3-ktacl-CoA_syn 25 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
Viun9g03840 509 FunFam 3-ketoacyl-CoA synthase 116 485 - -
Viun9g03840 509 PANTHER 3-KETOACYL-COA SYNTHASE 71 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Viun9g03840 509 SUPERFAMILY Thiolase-like 314 487 IPR016039 GO:0016746
Viun9g03840 509 Gene3D - 138 485 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03840 Viun-Chr9 42961930 42964058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03840 23 509 Miscellaneous Gene Families AT1G19440 81.109 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03840 K15397 - egr:104418843 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03840 9 42961930 42964058 Viun9g03840 9 42961930 42964058 ECH