Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03757 ATGAATTCTCGAGCTCTACAGTTCATTGGTGCTGGTGCTCAGAATTTTAAAGATTGGTTTGCTTTTATTGGTAGAAAAGCAGCCCCTCATGGTCTTGGTTCACCATATGCAATTACATTCAGGTCAAATGCAATTGAGTCATCTGGCATGAAACCTATGAATGTTTCAACTTATTCGTGTGGAGATATTTCTCTTGGCTGTTCTTGTGGTGACTGCCCTTCATCTTCAGTATGCTCCGTTTCATCTTCAACTACCACCAGTAAGAAGGATTCATGCTCCGTGAAAGTTGGGACTTTAGTGGTGAAATGTGTTGACTTTATTTTGGCAGTCTTGTACATTATACTGATTTGTGTGTTCTTGGGTTGGGGACTGTATCATCGGATAAGAGAAAGGAAACCTACATACAGAACTAAATCAGTGTCTAATGTCATTAGTGACGGTGCACTGTATACTCGTAACAGGGAGAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCCCGAGAAAACAGAAATGAAGTCCGGCTCTCTGCAGTGCAGGGATATATGTCAAATTTTTACAGGAAATATGGATCGTATGTAGCTAGACATCCGATTGTGATGTTGGCTTCATCTGTCGCTATTATTCTTCTCCTCTGTGTTGGTCTAATTCAGTTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGAAGCAAAGCAGCGCAAGAGAAGCAGTTTTTTGACAGTCATCTTGCTCCATTTTACCGAATTGAACAGCTCATACTGGCAACAATTCCAGATCACGTAAATAGTACATCACCAAGAATTGTGTCAGATGACAACATTAAATTTTTGTTTGAAATACAGAAAAAGGTTGATGCTATTCGTGCTAATTATTCTGGCTCGATGGTATCTCTGCAAGACATATGTATGAAGCCACTAGACAAAGATTGTGCTACTCAAAGTGTCCTGCAGTACTTCAAAATGGATCCCAAAAATTTAGACAATTACGGGGGAGTTGACCATCTCAATTACTGTTTCGAGCATTATTCCTCAGCAGACCTATGTATGAGTGCATTTAAAGCTCCTCTTGATCCAAGCACTGTATTAGGAGGATTCTCTGGAAATGATTATTCAGGGGCATCTGCATTCGTTGTAACGTATCCAGTAAATAATGCCGTTGATAAAGAAGGTAATGGAACAAGAAAGGCAATTGCTTGGGAGAAGACCTTTATTCAGCTGGTGAAGGATGAACTGTTACCAATGGTACAATCAAGAAATTTGACTCTAGCTTTTTCATCTGAAAGCTCTGTTGAAGAAGAGTTGAAAAGAGAAAGTACTGCAGACGCTATTACTATATTGGTTAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTCTAGGGGATACACTGCATCCTTCATTTTTCTATATTTCTTCAAAGGTGCTACTTGGTCTTTCTGGAGTCATTCTTGTTATGTTGTCTGTCCTTGGGTCGGTTGGATTTTTTAGTGTCCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCTTTTCTTGTCCTAGCTGTTGGGGTTGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAACGACTGGAGTTGCCCTTAGATGAACGAATAAGCAATGCACTTGTGGAAGTTGGACCATCAATAACACTGGCCAGTGTTTCGGAGGTTTTAGCATTTGCAGTTGGTAGTTTTATTTCCATGCCTGCAATCCGTGTGTTTTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCTTTTGTTGCTTTGATAGTTCTTGACTCTCTGCGGGCAGAAGATAAAAGGGTTGACTGTTTTCCATGCATAAAAGTACATTCGGACCCTGATATAGGCATTGGACAAAGAAAACCTGGCTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATATGGGGTGTAAAAATAGTTGTCATAGCAGTTTTTGTGGGATTTACATTTGCTAGCATTGCATTGAGCACTAGAGTTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGAGATTCATATCTTCAGGGTTATTTCAGTAATGTTTCAGAATATCTCAGAATTGGACCTCCTTTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCACCACAAACAAATCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAAAGTGGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTGGATGATTTTCTAGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGACAACTCCTGTGTTTCAGTTGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCAGAATGATCGTCCATCTACAACCCAATTTAGGGAGAAACTGCCATGGTTCCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCACGGAGCATACACCAGCAGTGTTGAACTGACAGGCTACAACAATAGCATTATTCCCGCCTCATCATTTCGTACATATCATACCCCGCTTAACAAGCAGATTGACTACGTTAATTCTATGAGGGCTGCTCGAGAATTCAGTTCAAGAGTTTCTGAATCTTTAAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCTATTGGTGCGGTTTTTATCGTTTGTTTGGTTATCACGGGCAGTTTATGGAGTTCATCAATAATTTTGTTGGTCTTGGCAATGGTTGTTGTTGATCTTATGGGAGTGATGACCATTCTGAATATCCAGTTGAATGCTCTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCGGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAAGCTTTGAGTACAATGGGCGCTTCAGTGTTCAGTGGCATTACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTATTTGTGATTTATTACTTTCGGATGTACTTGTCGTTAGTGCTTCTTGGTTTCTTGCACGGACTTGTCTTTTTGCCGGTGGTATTAAGCATATTTGGTCCACCTTCAAGATGTTCAATTACTGAGCAAGGGGAAATTCGTTCATCAACATCTTCACGACAGTAA 3333 0.4077 MNSRALQFIGAGAQNFKDWFAFIGRKAAPHGLGSPYAITFRSNAIESSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSVSSSTTTSKKDSCSVKVGTLVVKCVDFILAVLYIILICVFLGWGLYHRIRERKPTYRTKSVSNVISDGALYTRNREKDENLPMQIHMMEDARENRNEVRLSAVQGYMSNFYRKYGSYVARHPIVMLASSVAIILLLCVGLIQFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATIPDHVNSTSPRIVSDDNIKFLFEIQKKVDAIRANYSGSMVSLQDICMKPLDKDCATQSVLQYFKMDPKNLDNYGGVDHLNYCFEHYSSADLCMSAFKAPLDPSTVLGGFSGNDYSGASAFVVTYPVNNAVDKEGNGTRKAIAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSFFYISSKVLLGLSGVILVMLSVLGSVGFFSVLGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQRLELPLDERISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHSDPDIGIGQRKPGLLARYMKEVHAPILSIWGVKIVVIAVFVGFTFASIALSTRVEPGLEQEIVLPRDSYLQGYFSNVSEYLRIGPPLYFVVKNYNYSSESPQTNQLCSISRCNSDSLLNEIAKVALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDNSCVSVGTCKDCTTCFRHSDLQNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELTGYNNSIIPASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSESLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGAVFIVCLVITGSLWSSSIILLVLAMVVVDLMGVMTILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALSTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSITEQGEIRSSTSSRQ 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03757 1110 ProSiteProfiles Sterol-sensing domain (SSD) profile. 448 611 IPR000731 -
Viun9g03757 1110 Gene3D Multidrug efflux transporter AcrB transmembrane domain 400 617 - -
Viun9g03757 1110 Gene3D Multidrug efflux transporter AcrB transmembrane domain 896 1093 - -
Viun9g03757 1110 FunFam Putative Patched sphingolipid transporter 902 1092 - -
Viun9g03757 1110 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 425 611 - -
Viun9g03757 1110 Pfam Patched family 242 723 IPR003392 GO:0016020
Viun9g03757 1110 Pfam Patched family 876 1088 IPR003392 GO:0016020
Viun9g03757 1110 NCBIfam Niemann-Pick C type protein family 2 1089 IPR004765 GO:0005319|GO:0016020
Viun9g03757 1110 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 1 1098 - -
Viun9g03757 1110 FunFam NPC intracellular cholesterol transporter 1 405 622 - -
Viun9g03757 1110 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 897 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03757 Viun-Chr9 42541596 42555526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03757 2 1108 Miscellaneous Gene Families AT1G42470 72.072 0.0 1600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03757 K12385 - gmx:100784611 1978.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03757 9 42541596 42555526 Viun9g03757 9 42541596 42555526 ECH