Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03717 ATGGCCGCCGTCACCTCCGCCGCCGTCGCCATTCCCTCATTCACCGGCCTCAAGGCGAGTGGAGCAACCAAAGCGAGTGCCGCAGTTAAAGTCTCAGTTCCCCAGGCCCCGCGCTTCGGCATCAAGGCTTCCCTCAAAGACCTTGGAGCCGCCGTAGTGGCCACCGCCGCCAGCGCCGTCCTCGCCAGCAATGCCATGGCCGTTGAAGTCTTGCTCGGTAGCAGTGACGGAGGTCTGGTGTTCGTTCCCAGCGATTTCTCCGTCGCCTCCGGAGAAAAGATCGTGTTCAAGAACAACGCAGGGTTCCCGCACAACGTTGTTTTCGATGAGGACGAGGTTCCCAGTGGCGTGGATGCAGGATCAATCTCCATGCCCGAGGAAGAGTTGCTGAACGCACCTGGTGAGACTTACAGCGTCACTCTCAGTGCCAAGGGAGCCTACAGTTTCTACTGCTCGCCTCACCAAGGAGCTGGTATGGTCGGAAAAGTCACTGTTAACTGA 501 0.5888 MAAVTSAAVAIPSFTGLKASGATKASAAVKVSVPQAPRFGIKASLKDLGAAVVATAASAVLASNAMAVEVLLGSSDGGLVFVPSDFSVASGEKIVFKNNAGFPHNVVFDEDEVPSGVDAGSISMPEEELLNAPGETYSVTLSAKGAYSFYCSPHQGAGMVGKVTVN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03717 166 SUPERFAMILY Cupredoxins 65 166 IPR008972 -
Viun9g03717 166 Pfam Copper binding proteins, plastocyanin/azurin family 69 166 IPR000923 GO:0005507|GO:0009055
Viun9g03717 166 PRINTS Plastocyanin signature 145 164 IPR002387 GO:0005507|GO:0009055
Viun9g03717 166 PRINTS Plastocyanin signature 73 92 IPR002387 GO:0005507|GO:0009055
Viun9g03717 166 PRINTS Plastocyanin signature 96 114 IPR002387 GO:0005507|GO:0009055
Viun9g03717 166 CDD Plastocyanin 68 166 IPR002387 GO:0005507|GO:0009055
Viun9g03717 166 NCBIfam plastocyanin 68 166 IPR002387 GO:0005507|GO:0009055
Viun9g03717 166 ProSitePatterns Type-1 copper (blue) proteins signature. 145 159 IPR028871 -
Viun9g03717 166 Gene3D - 68 166 IPR008972 -
Viun9g03717 166 PRINTS Type I copper blue protein family signature 143 157 IPR001235 GO:0005507|GO:0009055
Viun9g03717 166 PRINTS Type I copper blue protein family signature 87 100 IPR001235 GO:0005507|GO:0009055
Viun9g03717 166 PRINTS Type I copper blue protein family signature 102 117 IPR001235 GO:0005507|GO:0009055
Viun9g03717 166 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 79 166 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03717 K02638 - gmx:100306554 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03717 9 42316743 42317549 Viun9g03717 9 42316743 42317549 ECH