Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03709 ATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCAACATCCACAGCGTTCCATTTCCAGTTTCGTACCTCACCTTCTTCACTCTTTCTCTGTTCTACGAGCTATAAATTTCGTTCTACCACAGCGAGCGCTGGTTCTGGTTTCTCTGGCGACTCAGACTCCGATGGAGATAGAAAATTGAACTTCTCCGGTGTGCGGCTGGAGGAGGCTGTCGATAGCACAATAGGATCTACAAAACTAAGACTCGATAGTTGGATCTCTTCCCGCATCAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTCAATGGTCGTGTCGTTGATAAGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATAAAATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACGTCGGGGACACTTGTCAATGGCATTCTTCACCATTGCAATCTTCCAAATGTTGAATTTTCTAAAGATGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAGGTTAATAGCTATGGCTCCATGGCAAGTTCTTATGAGGGATCACATTCTAGACTGTCTATGTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTTGTTGTTGCAAAGGATGAGCATTCGCATATGAAATTATCCGAGCAATTTAAACAACGCACCATCAAGAGGGTTTATGTTAGTCTTACTGCTGGGGTACCCACTCCGGTTTCTGGGCGAGTTGAGGTTCCAGTTGGCCGTGATCTTAATAACCGGTTGCGTATGACTGCTGTAGCTGGACCAGTCAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAGAGTAATCGAGATACTTGCTGGGGGAAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTTCCTTTACTCGGTGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCTCTACTAAGGCCCCGAACTCCTATCAGTTTGCATGGCAAAATTGTTCAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACTCTCGGGTTTCAGCATCCCCATACAGGGGAGCTGGTGCACTTTTCATGTGAACCCCCTGTAGACTTCGATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAGTGTTTCTTTCTCAAAGCGTTCAAATTTTTGA 1344 0.4509 MLSFHSCGCCRVSTSTAFHFQFRTSPSSLFLCSTSYKFRSTTASAGSGFSGDSDSDGDRKLNFSGVRLEEAVDSTIGSTKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDEVNSYGSMASSYEGSHSRLSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPTPVSGRVEVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYRVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSRLDRPCLHALTLGFQHPHTGELVHFSCEPPVDFDEILSQLRRIGSESVSFSKRSNF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03709 447 MobiDBLite consensus disorder prediction 197 225 - -
Viun9g03709 447 CDD S4 82 160 - -
Viun9g03709 447 MobiDBLite consensus disorder prediction 209 225 - -
Viun9g03709 447 Gene3D Pseudouridine synthase 138 420 - -
Viun9g03709 447 SUPERFAMILY Alpha-L RNA-binding motif 80 168 - -
Viun9g03709 447 Gene3D - 73 137 IPR036986 GO:0003723
Viun9g03709 447 SUPERFAMILY Pseudouridine synthase 141 432 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun9g03709 447 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 85 428 - -
Viun9g03709 447 Pfam RNA pseudouridylate synthase 155 350 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun9g03709 447 ProSiteProfiles S4 RNA-binding domain profile. 81 154 - -
Viun9g03709 447 SMART s4_6 81 146 IPR002942 GO:0003723
Viun9g03709 447 CDD PseudoU_synth_RluA_like 156 405 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun9g03709 447 ProSitePatterns Rlu family of pseudouridine synthase signature. 236 250 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun9g03709 447 Pfam S4 domain 82 128 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03709 Viun-Chr9 42262283 42267709 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03709 K06180 - gmx:100810383 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03709 9 42262283 42267709 Viun9g03709 9 42262283 42267709 ECH