Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03643 ATGAGTAGAAGACCTCCTCCTGATCCCGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTTTAAGCCGATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGAATTTGGGATACCCTTCAGCATCGAACTGTGTCATCTGCATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCTTGTGTTTCTTCCCTCGGAACCAATAAATTTGCCAGCCAGGGTAGGGATGGAACTGTAAAAATTTGGGAATTTGATGATGCTGGTTTGTCAAGGATCCCATCACTTACAATCAAGACAAACAGTTACCACTTTTGCAAATTTTCCGTGATGAAGAATGATTCTGTTTGGTCAACACAAGGGAAAGAATTAGAAGATTGCTACAGAGGAGAGCCAGGAGGAATGTCTGATAGAGAAATTCCCGAGGTTAAAAGGGACGAGGCTTACACCAATCAAAGTTGTTCTAAAAGCTTTGGAGAAAATACATGTAGTGAAGGGCTACAATATGTGGCTTTGTCAGGGGAGAACTCTTCAGAGGTTGAAATTTGGGATCTCAAGTCAGCTCAAAAAATTGTACAACTCGCTTCAAGCAATCCCAGTAACTCTTCAAGTGTTAGCAACAGAGGGATGTGCATGACCCTTCAATTGTTTTTATCATCGGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATATACGGAATCCTAGAGTTCCGGTAACTTCTGTAAAATTTCATTCTGAGCCAGTTATGAGCATCTGTATTGACGGGTCTTGCAAAGGGGGTATCTCAGGAGCAGCAGATGACAAAATTATAATGTACAGCTTGGAGCATTCTTCGGGTACTTGTGTAGTTAAGAAAGAAATCAGTTTGGATCGACCAGGCATATCAGGCGTCTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATATAATTACCGCAAGGGAAATGCTTTAGCTATTTTGAAGTATCACCATGGCACATGCAACGCTGTAACTTATTCCTCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGGCTATGGGAACTGTATCCTCCTACAACATCATAG 1161 0.4315 MSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVACVSSLGTNKFASQGRDGTVKIWEFDDAGLSRIPSLTIKTNSYHFCKFSVMKNDSVWSTQGKELEDCYRGEPGGMSDREIPEVKRDEAYTNQSCSKSFGENTCSEGLQYVALSGENSSEVEIWDLKSAQKIVQLASSNPSNSSSVSNRGMCMTLQLFLSSESQGFLNVLAGYEDGSMLWWDIRNPRVPVTSVKFHSEPVMSICIDGSCKGGISGAADDKIIMYSLEHSSGTCVVKKEISLDRPGISGVSIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPTTS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03643 386 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Viun9g03643 386 Pfam WD domain, G-beta repeat 344 378 IPR001680 GO:0005515
Viun9g03643 386 Pfam WD domain, G-beta repeat 312 337 IPR001680 GO:0005515
Viun9g03643 386 Gene3D - 142 385 IPR015943 GO:0005515
Viun9g03643 386 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Viun9g03643 386 Gene3D - 4 133 IPR015943 GO:0005515
Viun9g03643 386 PANTHER TRANSDUCIN BETA-LIKE 3 4 380 - -
Viun9g03643 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 386 - -
Viun9g03643 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Viun9g03643 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Viun9g03643 386 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Viun9g03643 386 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Viun9g03643 386 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Viun9g03643 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 386 IPR001680 GO:0005515
Viun9g03643 386 SMART WD40_4 50 91 IPR001680 GO:0005515
Viun9g03643 386 SMART WD40_4 340 379 IPR001680 GO:0005515
Viun9g03643 386 SMART WD40_4 6 45 IPR001680 GO:0005515
Viun9g03643 386 SMART WD40_4 298 337 IPR001680 GO:0005515
Viun9g03643 386 SMART WD40_4 252 291 IPR001680 GO:0005515
Viun9g03643 386 SUPERFAMILY WD40 repeat-like 4 379 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03643 Viun-Chr9 41836812 41843793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03643 235 380 Miscellaneous Gene Families AT5G08390 23.288 6.75e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03643 K24770 - gmx:100800482 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03643 9 41836812 41843793 Viun9g03643 9 41836812 41843793 ECH